Ccal041670.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- mod(mdg4)
- Assembly
- GCA_963942595.1
- Location
- OZ012709.1:48269450-48271419[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.1e-05 0.14 13.4 0.0 5 38 217 250 213 256 0.72 2 5 1.9e-11 5.1e-08 34.0 0.0 5 43 267 305 264 307 0.86 3 5 0.012 34 5.7 0.0 6 34 320 347 317 353 0.85 4 5 2.1 5.6e+03 -1.4 0.0 32 45 362 376 361 376 0.90 5 5 2.3e-11 6.2e-08 33.7 0.1 4 39 378 413 375 418 0.93
Sequence Information
- Coding Sequence
- ATGTCCGCCGCGATAGTAgcgaacagcagcagcagcagcagcagcagcagtcaaCCTCAAGTTGAGGAGAGCTATTGTTTCAAATGGAGCGATTATCACAATCACTTGTCAGGGGTAGTACGCCAACTCCTGGAGGAGGAATGTATGGTCGATGTGACGCTAGTTGCTGCCGGAGAACGTATAAAAGCTCATCGAATCGTACTTTGTTCCTGCAGTACTTTGTTTCAAGAATTACTCAGTCAGGTCAATGAGGATCATCCGACAGTTATATTGAGCGATATATCCGCAGAGGATGTGAGATCAATCGTGAATTTTAGCTACCATGGCGAAGTTAGAATTCCTGTTGAAAATATCAGCAATTTATTGGAAGCTGCTCACTCGCTAAAAATTTGTGGACTTATGGAGATCGATGGACTAGACGAGAACGATGGAATTATAAGTGCAAAGGACGTTTCGACAGAGGATCCCACAGATATAAATTTAATGGAATCCAATGAATCGGATAAGACTGAATCTGAACCAATATCGGCACACGACCACTCGAAGAAGAGTTCTGGAAGAAGAGGCAACAATGATTCTtcgttgtgcaataaaaataaacGGAAGCGCAGAACGGATTCGACGAAGAGGGAATACAACGAAGATATGTTAGTCTCGGCGTTGAATGATTTGAAAGGTGGTCAGACGCTGATAGAGGCAGCTACGAAAAATAACATACCACGTTCCACGCTTTACATGCGAGCCAAAGCACTGGGAATACACTTGAATGCATCGAGAAACGAATATCCAGCGGAATGCATGAAAGCAGCTATCGAAGCTGTGATCGAGGGTTCGAGCTTGCAGCAAGCTTCAGAAAAATTTTATATACCGAAAACTGTTCTTTGGCGACGAATACAGAAAGAGGGATATCAGGTAACGCGTTCCGAGCTTAAGAGATCTTATGGATCTGAGAAGAGGCAGGAGGCTGTGAAAGCATTGCAAAGAGGCGAAAATCTTACAAAGGTTGCATTAGAGTTTCAGATACCAAAGACGACGTTATTTCGTGACAAAGCAAGACTGGTGGACGAAGGTAAATTGCCGGAATCTTTTTGGAAGAAGCGAAAAGCTGGAAACGAGGAAGTCAAGCGATTGCAACTCGAAAAGGCAGTGGCAGCTTGTAAAGGTGGCAAAATGTCTCAAGCTGTAGCCTCCGTGACCTATCAAATTCCCAAAACTACTATTTGGCGTAGGCTTCAACAGGAAGGAAAGAATTCCGAGCGTGTCGCAGCTTCGAAAGGTGGTGAACCAAATTTGGAACTCGAGGAAATGAACACAGTGAAAGACGAACAAGAGAATTCTGAATTTGGGTTCTGCGAGGTGTCCTCGGAAATTCCTATAACGTACATAGACGAGAACAATCTACCAGAGGATTCTGTAATAATCTTAACTACGGAAGACGTGGAAGCCCTTAATCTCGAGGAAGGCAGACAGATTATCGTGAACCAAGATTCTGGTCAGGAGTACGTACGTTGTGCCTTGAGCATAAGAGAAAACGCAGAGTGCACAGAATACCGACCGGCGGAAAGCTAA
- Protein Sequence
- MSAAIVANSSSSSSSSSQPQVEESYCFKWSDYHNHLSGVVRQLLEEECMVDVTLVAAGERIKAHRIVLCSCSTLFQELLSQVNEDHPTVILSDISAEDVRSIVNFSYHGEVRIPVENISNLLEAAHSLKICGLMEIDGLDENDGIISAKDVSTEDPTDINLMESNESDKTESEPISAHDHSKKSSGRRGNNDSSLCNKNKRKRRTDSTKREYNEDMLVSALNDLKGGQTLIEAATKNNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAIEAVIEGSSLQQASEKFYIPKTVLWRRIQKEGYQVTRSELKRSYGSEKRQEAVKALQRGENLTKVALEFQIPKTTLFRDKARLVDEGKLPESFWKKRKAGNEEVKRLQLEKAVAACKGGKMSQAVASVTYQIPKTTIWRRLQQEGKNSERVAASKGGEPNLELEEMNTVKDEQENSEFGFCEVSSEIPITYIDENNLPEDSVIILTTEDVEALNLEEGRQIIVNQDSGQEYVRCALSIRENAECTEYRPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414448;
- 90% Identity
- iTF_00414448;
- 80% Identity
- iTF_00414448;