Cfor015514.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000008.1:16831769-16836930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0012 0.096 13.5 1.7 1 23 67 89 67 89 0.97 2 16 5.4e-05 0.0043 17.8 4.6 1 23 98 120 98 120 0.99 3 16 0.0022 0.18 12.7 3.1 1 23 131 153 131 153 0.94 4 16 0.026 2.1 9.3 3.6 1 23 162 185 162 185 0.97 5 16 1.2 98 4.1 4.1 1 23 194 216 194 216 0.97 6 16 1.4 1.1e+02 3.9 4.4 1 23 240 262 240 262 0.97 7 16 0.0073 0.59 11.1 3.1 1 23 270 292 270 292 0.94 8 16 0.013 1 10.3 2.5 1 23 301 324 301 324 0.97 9 16 0.0061 0.49 11.3 1.3 1 23 382 404 382 404 0.98 10 16 0.053 4.3 8.4 3.6 1 19 409 427 409 431 0.91 11 16 0.002 0.16 12.8 5.1 1 23 440 463 440 463 0.98 12 16 0.011 0.89 10.5 0.8 1 23 471 493 471 493 0.97 13 16 0.11 9.1 7.3 4.5 1 23 502 525 502 525 0.97 14 16 0.0062 0.5 11.3 0.6 1 23 533 555 533 555 0.96 15 16 0.00026 0.021 15.6 3.8 1 23 595 617 595 617 0.98 16 16 0.0045 0.36 11.7 3.9 1 23 624 647 624 647 0.96
Sequence Information
- Coding Sequence
- ATGTTGCTGACATCCTGGGTCTTCCGGGGCAGCTGCCTAAACGGGATGATCGACGAATACGATACGTTTTCTTACGAGAAACTCGGCGATGTGCGCAACGATGGTTTGAAGTCGCTGTCCGATTGCGTACCCTCTCAGAACAGGGTGCCCGTAGTACTATCAGAAGTTAAGTGTGACAGTGTCGACAGCGAGCGAAGATTTAAGTGCGACTTATGCGATTATCGGAGCAACGCGAAGGACAACCTGAAGAAACATTCTCTGAGACACAAGAGTTTGGACGAGGTGCCGCGATATAAGTGCCACCATTGCGATTACGAAACTAAACGCAAAGGTGACTTGGTGGTGCACTTGAAACGACACCAGCAAAAACGAGATCTGGGCGAGAAGAATTTCAAGTGCGACTTGTGTGATTACCGATGTTACACTAAAGCGACTTTGAATAAACACTCCGTGGTGCACAAAAAACCGGAGGAAGTGCCCATGTACAAGTGCGACAGATGCGATTTTCGATCCAAATACAAGTCCGTTTTTAAGAGACATAATAATACAGTGCACAAAAATCCCGAGGAAGTGCATCTATATAATTGCGAGAGGTGCTATTTTCAAACCAAATACAAAGAGAGTTTCCTGCAACACAAAAGATTACACCTGGGGATCAGCAGGCAAACATACAGGTGCCAAGTGTGCGAATACCTAGGTTCCGATGATGTGATCTTACATAAGTGCAGCCGTTGTGATTTTCAAACCAAATACAAAAGGGCGTGGTTGTTGCACACGCAGCGACATTTGGGCGACAACGGGAAATCATTCAAGTGCGACTTATGTGATTTCCGATGTTATACGAAAGTAAATTTGAAGATGCACTCCGTGGTGCACAAAAATCCGGACGAAGTATCTCTGTTCAGGTGCTACAATTGCGAATATGAGACTAAAATCAAATATCATTTAGTGAAGCACTTGAAAGTGGCGCACAAAAACCCCGAGGAAGTGCatTTGAAGCAGCTGCCCGATTGCGACCCCTCAGAAAATAGGGTACTGTTAGTAGAGACCAAAAAGTGCAGCGGTGCCAACAGCGGGAGACCTAAGGGAAGCTTAGGAAAACGTTCTGTTGTGCTTCGTAAAAGTGCGTACGAAGTGCCCCCATATAAGTGCAACGACTGCGACTATCTAACAAATGTCAATGGACATTTGGCGGATCACTCGAAACGGCACTCGGCGAAAAATTTCAAGTGCCATCTGTGTAATTATGCGGGcgtcaaaaaatccaaattagaAAGACACTGTGCGGTGCATAAAAATACGGACGACGTGCCTTTATATAAGTGTCACAACTGCGTTTACCAAACCAAGTACAAAGAGAACTTGTTGAAACACATCAAAAGACGGCACGTGGTGGGCGgggaaaaaatattcaagtGCGATTCGTGCAATTACCGTTGCGCTGTTATTTCTGATTTGAAGCAACACGCCATAGTTCATAAAAATCCACAAGAAGTGGCTCTACACAAGTGCGACGACTGCGCGTACCAAACGAAATACAGAACGAGTTTTTTGTCGCACTTACGGCGGCGGCATTCGGTCGTCACCGAGAGAAAATTTGAGTGTCCCGCGTGTGATTATCGATTCCTtactaattttgaattgaaGAAACACTCCTTGGTGCACAAAAATGCGGACGAGGTGCGTCTACATAAGTGCGACCACTGCCATTACCAAACTAAACATAAAAACTGCTTGGTGGAGCACGTCCATCGGCGGCACTCTGCACTCAGCGAGAGGAAATTCAAGTGCGAGTTGTGTGATTATCGATGCGTTAgaaagtcttatttaaaatcACATTCCATGGTGCACAAAAATGAGGTGCCTCTCTACAAGTGCGACAAGTGCGACTTTCAAAGTAAATACAAAAGCTGCTTGGTGAAGCACATACAAGGGCAACACTAG
- Protein Sequence
- MLLTSWVFRGSCLNGMIDEYDTFSYEKLGDVRNDGLKSLSDCVPSQNRVPVVLSEVKCDSVDSERRFKCDLCDYRSNAKDNLKKHSLRHKSLDEVPRYKCHHCDYETKRKGDLVVHLKRHQQKRDLGEKNFKCDLCDYRCYTKATLNKHSVVHKKPEEVPMYKCDRCDFRSKYKSVFKRHNNTVHKNPEEVHLYNCERCYFQTKYKESFLQHKRLHLGISRQTYRCQVCEYLGSDDVILHKCSRCDFQTKYKRAWLLHTQRHLGDNGKSFKCDLCDFRCYTKVNLKMHSVVHKNPDEVSLFRCYNCEYETKIKYHLVKHLKVAHKNPEEVHLKQLPDCDPSENRVLLVETKKCSGANSGRPKGSLGKRSVVLRKSAYEVPPYKCNDCDYLTNVNGHLADHSKRHSAKNFKCHLCNYAGVKKSKLERHCAVHKNTDDVPLYKCHNCVYQTKYKENLLKHIKRRHVVGGEKIFKCDSCNYRCAVISDLKQHAIVHKNPQEVALHKCDDCAYQTKYRTSFLSHLRRRHSVVTERKFECPACDYRFLTNFELKKHSLVHKNADEVRLHKCDHCHYQTKHKNCLVEHVHRRHSALSERKFKCELCDYRCVRKSYLKSHSMVHKNEVPLYKCDKCDFQSKYKSCLVKHIQGQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -