Cfor015688.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000008.1:19290725-19297737[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.012 16.4 0.6 1 21 184 204 184 205 0.95 2 12 4 3.2e+02 2.5 0.7 2 23 216 237 216 237 0.89 3 12 1.6e-06 0.00013 22.6 0.6 1 23 240 263 240 263 0.96 4 12 0.038 3 8.8 4.1 1 23 268 291 268 291 0.96 5 12 5.2e-05 0.0042 17.8 1.2 1 23 303 325 303 325 0.97 6 12 0.056 4.5 8.3 2.6 1 23 331 354 331 354 0.92 7 12 4e-07 3.2e-05 24.5 0.5 1 23 360 382 360 382 0.96 8 12 0.00094 0.075 13.9 0.2 2 23 389 411 388 411 0.93 9 12 0.0013 0.11 13.4 0.9 2 23 441 462 440 462 0.96 10 12 0.1 8.2 7.5 0.8 1 23 468 490 468 490 0.96 11 12 5.8 4.6e+02 1.9 2.8 2 23 788 810 785 810 0.91 12 12 0.00011 0.0087 16.8 0.9 1 23 815 838 815 838 0.98
Sequence Information
- Coding Sequence
- ATGACCAGTCCTGAAACTGTAGAAACAGACGATTTAATAAAATGCCGAACTTGTTGGGCGGACACAAGTCCAGACGAGTACGTTCGGGTAACGGATAAATGGACAGACGGCGTGCGTTGCGTTAAAGATGTCCTGGATTTCTGCGTGCCTCTCGTGGTGATCGAAGAGGACAGTGTGATATGCCACAAATGTTTCAACAGCCTGGAAGGTTGCGCAACATTTATCGAAAGATGCCTCTATGTGGATAAGGTTCTCAAAGTCGAAAACCAGGAGGATGAAGAAGATGACGGCGATGATAAGGAAATCGGTATTTCCGTGGCTGATTCCGACAATTTCGACGAGAGCTCAATCGATTCGCAGCAGTTGCCAGACAATAAACGCAAGGGCGCCCAGAAAAGGGACCACAGTTACTGCAATGACGACGACAAAGAGAACAACGGTAGCAAAGCCAAGAAGCAAGCGTTGGGCAATGAGCAATCACCAAAAAAGCTGGATTTATTGAATATCAAGCTTCCCAACCTTAAGTTTAAGACGGTGAAGGTGTGTCACTTTAAATGCGAGAAATGCACCAAGATCTTTACAAACCTTGTGGAGTACCAAACACACATGGAGAGCGTCAAAGACGCTCCCGAGTGCGACTATGAGCAGTGCGACATTTGTTTGCAAAAGCTGCGTAGAGGCGACCTCAGGAATCACAAGGAAGAGCAGCATTCCAGCCACGTTTGTGAAGAGTGCGGCAAATCTTTCTCGTCGTTGATCGCACTCAAGTCCCACCAGCGTAACGTTCACCCCAAAGAATCTTACCCTTGTCCGCATTGCGAGAAAGTGCTCAAAACGATGAATTCGTTGCAGTGCCACATCCGACATGTTCACAAAGAGGAGGACGATAGAGAACAATATCAGAAGTTTATGTGCGACCGATGCCCCAAACGTTACGAGAAACGGAGCTCGCTAGAGCGCCATCTTAAATGGCACGACAACATCCGCGATTATGAGTGCGAACAGTGTTACAAAAGCTTCTTCACCAGCAACGAGCTGCTATGTCACGCCAgGTTGATGCATTCCAACGAGGAGACGTTCTTCTGCGAGATTTGCGGCAAGGGTTTCGTCCGTTCGGACTACTTGCGTCGCCACATGGCGTATCACGCGAAGTATGTCGACTCGTCGTGTCCTGTGTGTAAAAAGCTGTTCCGTTCCGAGACGAAATTGGCGAACCATATGGAGGCGGGGCACGACGCGAACGGCGTGTCACTAGAAAAGCCGAAATCGCGTACTCAGACCGGCAAAAACAAGATCCCCGGCCACTACAAAGCCAAGTGCGTCTGCAAGATATGCAAGAAGGTGATCGCAAATCCTTTCGGCCTGCGCGTTCATTACAAGTCGCATTTGAAACTCAAATCGTTCAAGTGCGAGTTTTGCGGGGTGCTGCTGCAGTCGCCCATTTCGCTCAAGCGCCATCACGAGCTGCACAAGGACCCGAACTACAAGTACAGTATGTTTATGTTCTTTAATGGCCCTGATATCACCAAAGGCGAGGTAATATACGCAATAAAACCCCAGAGAGACGGAAAAGCAACCGGCCCAGACAATATTCATGCCAAACTTATAAAACTCATAGCCGAACAAGAGGGAAAGGGACTGCAACTGCTAACCTCAATATTTAACACAATCTACCGTACAGGGACTGTCCCAACAGACTGGTTGCGCTCAACATTTATTACCCTGCCCAAGAAAACCCATGCTTCGAACTGTGATGAAAACCGCATGATAAGCCTGATGTCACATGTTCTCAAAATATTCCTCCGAATAATTCACACCAGAATTTACAAGAAATGCGAATACCAACGAGATGAAACTCAATTTGGATTCCTCAGTGGCTTAGGTACTCGTGAAGCGCTATTCGCGCTGAACGTTCTAACTCAGCGATGCAGGGACATGAATGTCAATGTAGTCGCTTGCTTCATAGATTATAAAAAAGCTTTCGACTGCGTTAAACACCAAAAGCTAATAGAAGTACTCAAAAAAACTGGAATAGATAGAGAAGAAATCCGATTAATTACAAATCTCTACTGGAAGCAAAACGCAGTAGtgaaaattgaagaaacaaCATCAGAGGCAATCATGCTTAGAAGAGGTGTCAACGTCAGATATGCCGACGACACCGTTGTCCTAGCCGAGAATGCGCAGGATCTGCAGAGGCTAATGGATCACATAGTGCGATACAGCGAAAACGCTGGCCTCCTCATAAACACTACAAAAACTAAGGTCATTGCATTTACCAAGACACCTGTTCAGATCATGGCGTCGGCAAATATTGATTGCTCTTCCGATGTGGGATCTCTTCAAAACAAATTTCGTTGCAGCTGCAAAATATGTCACGCGCGTAAGTCGTCGGCTGCCGAGCTGGACTACCACACCAACACGGTGCATAAAACGAAACGGTACAAGTGTCACATTTGCTCGGAGGCGTTCGGCAGACGGTATCTCCTGGACAGCCACCAGGCGACCGAGCACGCCGACGAAATCATCAAGCGCGAACTGATCCTGGAGGAGTTAAGCAAGGAGACGATGTACCTCGACCCGGAAGACGAGGCCAACCTGACGTACAGGGGGCCGAAAAACAACAAGGGCGTGAAAGTAGGCGTGGACGACGAGGACATCAATGAAATCATTCGGGAAATCGGCGAGGAGGCCGGTCTGGTTTTGGACGACGACGACAGGGTCCAAGCTCGGTCCCGTAAACATATCCAGGAGGAGGAAGAGGATGAAGAAGAGGAGGAGGGCGAGCTGCATCAGGAGACGGAGTTCGTCGACTTGAAACAAGAAAATGAAGACACTGAAGAGACGGAGGTGAGGGTGATTCAGGAGCTGGAGGAAATACCAGACGGGGAGTATTTGGAGATGATCGGAGAAGATGGTCGCCTGATTAGACTGAAACGGGAGGACGGGGAGTACGTGGAAGTATCCGATTACATGGAGGGTCAGGAGGTAACAGAAGTCGACGACGGGGAGTACCAGGAGGGCGCGGAAGTCGTCGAACTGTCTGAAGATCAGCTGGTCGAGTACGAGGAGGGCGGTGCGAGCGGCGACGGGCAGCAATACGAGGAGATGATCGAGGAGGGGGAGTATTTGGTGTACGAGGACGGGGTGGAGGTGGCCGCGGAAGAGGTGCAAGAGTGA
- Protein Sequence
- MTSPETVETDDLIKCRTCWADTSPDEYVRVTDKWTDGVRCVKDVLDFCVPLVVIEEDSVICHKCFNSLEGCATFIERCLYVDKVLKVENQEDEEDDGDDKEIGISVADSDNFDESSIDSQQLPDNKRKGAQKRDHSYCNDDDKENNGSKAKKQALGNEQSPKKLDLLNIKLPNLKFKTVKVCHFKCEKCTKIFTNLVEYQTHMESVKDAPECDYEQCDICLQKLRRGDLRNHKEEQHSSHVCEECGKSFSSLIALKSHQRNVHPKESYPCPHCEKVLKTMNSLQCHIRHVHKEEDDREQYQKFMCDRCPKRYEKRSSLERHLKWHDNIRDYECEQCYKSFFTSNELLCHARLMHSNEETFFCEICGKGFVRSDYLRRHMAYHAKYVDSSCPVCKKLFRSETKLANHMEAGHDANGVSLEKPKSRTQTGKNKIPGHYKAKCVCKICKKVIANPFGLRVHYKSHLKLKSFKCEFCGVLLQSPISLKRHHELHKDPNYKYSMFMFFNGPDITKGEVIYAIKPQRDGKATGPDNIHAKLIKLIAEQEGKGLQLLTSIFNTIYRTGTVPTDWLRSTFITLPKKTHASNCDENRMISLMSHVLKIFLRIIHTRIYKKCEYQRDETQFGFLSGLGTREALFALNVLTQRCRDMNVNVVACFIDYKKAFDCVKHQKLIEVLKKTGIDREEIRLITNLYWKQNAVVKIEETTSEAIMLRRGVNVRYADDTVVLAENAQDLQRLMDHIVRYSENAGLLINTTKTKVIAFTKTPVQIMASANIDCSSDVGSLQNKFRCSCKICHARKSSAAELDYHTNTVHKTKRYKCHICSEAFGRRYLLDSHQATEHADEIIKRELILEELSKETMYLDPEDEANLTYRGPKNNKGVKVGVDDEDINEIIREIGEEAGLVLDDDDRVQARSRKHIQEEEEDEEEEEGELHQETEFVDLKQENEDTEETEVRVIQELEEIPDGEYLEMIGEDGRLIRLKREDGEYVEVSDYMEGQEVTEVDDGEYQEGAEVVELSEDQLVEYEEGGASGDGQQYEEMIEEGEYLVYEDGVEVAAEEVQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -