Cfor019039.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000010.1:11004020-11005858[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0033 0.27 12.1 0.2 1 20 242 261 242 263 0.95 2 9 1.1e-05 0.00091 19.9 1.7 2 23 271 293 270 293 0.96 3 9 0.00023 0.019 15.8 3.5 2 23 311 332 310 332 0.97 4 9 0.0072 0.58 11.1 3.2 2 23 338 359 337 359 0.92 5 9 9.4e-06 0.00076 20.2 1.0 3 23 368 388 367 388 0.99 6 9 2.4e-06 0.00019 22.0 3.4 1 23 394 416 394 416 0.99 7 9 0.0049 0.39 11.6 1.2 1 23 422 444 422 444 0.92 8 9 1.3e-06 0.00011 22.8 1.5 1 23 450 472 450 472 0.99 9 9 0.079 6.4 7.8 1.7 1 21 476 496 476 499 0.78
Sequence Information
- Coding Sequence
- ATGGCGAAGGCTCGAAATTGCTACATCAAATACAGTCTGCAAACCAAGTGCAGGATATGCCTGACTCAAAGTTGGAAAACCGGAACCGATTTGACATCGCCTATGAACTCGAAGGCGGACCAGGTGACTGTAGCGGCCGCCTTGGAGGATTTGATGGGTGAAAGAGTGCCAATCGCCGCCGCGTATCCTTCAACGGTGTGCGGCATGTGCCTGGGGCTGCTCAATATAGCTTCCGACTTGAAAGTTCAGTTCAAAGAGAACCAAAAAGTTATTGCGGATGTTTTGGGCGAGGTAGAGCCGCAGGTGGTTCGAGAGAAGGAACCGCAGGCCCCCGTCGAGCTAGTTGTAGGCGGCAAAACGTACGATATTAAAAACCTACTGATAGTGGAAGAGGAGAATGAAAACGAGACGTTGAGTAATTTTGATGGTTTTCTGAGAAATTTGGGTAATACCATAACGGCCACCTTTGTCAATAAACATGCAAAGCCGTCAAAATTAGTCTGTGAaacaaaagtgaaaataaaaagacGTCCTACATCCTATGTCTTACAGAATAAGTCAAAAACAGATTATGTAATTGTTCCAAACAGTGAGGAAGAGTTAGACTCTAATGAAATAGATCGAGATGGTCAGAAACAACTGAACCTAAATATTAAACCAGAAAATTTAGGTCTTTTTTCAGAAACAGAGAGAGACCTTATAAATTCAGCCATGAATATGGTCTACAGTTGCATGTATTGCAAAAAGCCTTACACCTCCCTGGCAAGATTAAAGACCCACCTGGGAGTGTGTGGCAAAATTTCGAGTTTGCGGTGCCCTTTATGCAATAAAAAgttcattcaaaaaaaatttttgacataCCACATTAGAAAAGTTCACCTAACTGTTCAAAATTCTACAGATATTAAGGAGAGTAATCAAAATCCTCTCAAATGTACAACTTGCGGGACTGTGTGTCGGAGCTACAGTAATTTAAATTATCACAGGATAAAGCACAAAGGAAAGCAGTGCGCATGCGACACATGcgataaaaaattttatacaagaAGTCAATTGGCATTTCACAAACAGATCCATTCGAAAAAGGAAACCCGCGTGCTGTGCCCTATCTGTGGCAAAAGCTGTTACTACCAGAGCGGTCTGTTTTACCACATGAAAGTACACACGGACCAGAAAAATTTCCAATGCAGTTATTGCGACAGGCGTTTCTTTTATTCCGCTTCCTTGAAACGACACGAACGCACACATACCAACGAAAGACCCTTCCTTTGTAAATTTTGCGGTAAGGGCTTTAGATCGATAGACGAGAAAAAAAAGCATGAGTATATTCATACCGGGGAACGGCCGTACCAGTGCGACTATTGCGACAAAGGTTTTACTAAAACTTTTAGTTTACAAGTGCATTTGATGACGCATACCGGAAACTATGAATGCGAAATATGCCACAGGGGCTTCGTTACCCCCAAAGTTGTAGAGTTTCACATAAAACACAAGCACCGCGTAAAAGATGGTCAGGAAGAATGCCAGGAAGATCAGGTTGAATCTCCAGTAAACACTTTCTTAGAGGGAGAGGATAAGGCAGAAGAATATGTGATTGAAATGATAGCAAACGAAGATGAACTcgaaaattatcaagaaattcATGAGTTTGATATAATAGATGAAGCGACTGAAACCCAGTTTATAAACCCATTCGAATAA
- Protein Sequence
- MAKARNCYIKYSLQTKCRICLTQSWKTGTDLTSPMNSKADQVTVAAALEDLMGERVPIAAAYPSTVCGMCLGLLNIASDLKVQFKENQKVIADVLGEVEPQVVREKEPQAPVELVVGGKTYDIKNLLIVEEENENETLSNFDGFLRNLGNTITATFVNKHAKPSKLVCETKVKIKRRPTSYVLQNKSKTDYVIVPNSEEELDSNEIDRDGQKQLNLNIKPENLGLFSETERDLINSAMNMVYSCMYCKKPYTSLARLKTHLGVCGKISSLRCPLCNKKFIQKKFLTYHIRKVHLTVQNSTDIKESNQNPLKCTTCGTVCRSYSNLNYHRIKHKGKQCACDTCDKKFYTRSQLAFHKQIHSKKETRVLCPICGKSCYYQSGLFYHMKVHTDQKNFQCSYCDRRFFYSASLKRHERTHTNERPFLCKFCGKGFRSIDEKKKHEYIHTGERPYQCDYCDKGFTKTFSLQVHLMTHTGNYECEICHRGFVTPKVVEFHIKHKHRVKDGQEECQEDQVESPVNTFLEGEDKAEEYVIEMIANEDELENYQEIHEFDIIDEATETQFINPFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -