Cfor018716.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- lola
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000010.1:7536854-7541696[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.015 1.2 10.1 1.3 1 21 25 45 25 46 0.94 2 16 0.017 1.3 9.9 0.5 1 23 54 79 54 79 0.93 3 16 0.014 1.1 10.2 0.8 1 21 93 113 93 114 0.94 4 16 6.3e-05 0.0051 17.5 4.5 1 23 122 145 122 145 0.97 5 16 0.023 1.9 9.5 1.3 5 21 166 182 164 183 0.94 6 16 0.00078 0.063 14.1 3.5 1 23 191 214 191 214 0.96 7 16 0.13 10 7.1 5.5 3 21 238 256 236 257 0.93 8 16 0.00056 0.045 14.6 3.4 1 21 265 285 265 286 0.94 9 16 0.0068 0.54 11.2 0.5 3 21 302 320 300 321 0.94 10 16 0.015 1.2 10.1 0.1 1 23 329 352 329 352 0.97 11 16 4 3.2e+02 2.5 2.8 8 21 364 377 364 378 0.91 12 16 0.0015 0.12 13.2 2.1 1 21 386 406 386 407 0.95 13 16 0.0022 0.18 12.7 2.1 1 21 412 432 412 433 0.95 14 16 0.0033 0.27 12.2 2.6 1 21 441 461 441 462 0.94 15 16 0.0015 0.12 13.2 4.5 1 21 467 487 467 488 0.95 16 16 0.00015 0.012 16.4 2.0 1 23 496 519 496 519 0.97
Sequence Information
- Coding Sequence
- atggTTTTATTTTTCGCAAAATCGTATTACCGGTTACACCTCTTTCCTAGTCTGGGACGGTCAGAACTGCGATATTCTTGCGACAGATGCGGCCGTCACTATCGCTACATAGGCGGTCTGAATCAACACAAAAAGTTCATCTGCGGAAAGAAGCCTCAATTCGTCTGCTGGTTCCCCGGATGCGTTTACCGTACCAAGCTGAAGTTCGATCTCAACAAGCACATGAGGAACATTCACAAGCTGGCAGCCGCTAAGCGTCATTCGTTTGTAGGTTTCTACGAGTGCGCGTCTTGCAACAAATCGTATAAACTCAAGGGCTCGTTGGATAACCACAAAAAGTACGAGTGCGGCAAAGAACCGGCTTTCAAATGCCCGTTTTGTACGTATCGGTGCAAGCAGAAAGGTAACCTAAAAGCGCATATCAGCAGGAAGCACAGCTACCACGAGGACATCAACAGCTACTTGAATCCTTCGGTCAAAAGCAATTCGGCTTTGTACTGCTCCAAACGATACAAACACAGAGAATCACTTCACAAGCATTTGAAGTACGAATGCGGCAAGGAGCCCTCATTTAAGTGTCCTCACTGCCCTTACAAAGCGAAATTTAAGTTCAACTTGAAAAAGCACGTCGCGTCGCGCCACAGCGATTCGTATTTGGACAACGTCGTGGCCGCTTGGAAGTACGTTTTGACGCTCGAAGGGCGGTACGGGTGTCGAAGGTGCGGCTGTTCGTACAAGAGAAAGCAGCACTTCTTAAGACATGTGAACCACGAGTGCGACAACCAAAGGCATTTCATATGCTACAACTGCTCCCGCGGGTTCCGGCAGAAGTACCACCTGCACAGACATCTGTTGTCCGGCACTTGTTTTAAATCAGCGAAAAAACAcgattttatGATTGCGTGCAAGAACTGCGGCAGACTTTATAAGCTTAGGACGTCGCTCAATCGTCACCTCAAATTCGAGTGCGGGCTGGCGCCCAAGTTTAAATGTCTCGTGTGCTCTTACGCGACCAAGCAGAAAATCAATGCCGTCACGCACATGATAGTAGTCCACGGCATCAGAAAAGAGGATATTGTATTCGACCtCAGGAGCTACAAGCACAAATTCCACCTGCGTAGTCATCAGAAGTATGAGTGCGGCAAGAAGCCGGCTTTCGAGTGTGCCGTGTGCAAGAAGCGCTTCCATCATCAGTTCCTCTTGAATGCCCACGTGAAGCAGACAAAATGTTCGTTCGTATGCCCGACGTGTTACAAAGCGTACAGACACAGCCAGTCGCTGTACAACCACACGAAATTCGAATGCGGACAGTTGCCGCAGTTTACGTGTAAATTCTGCCCGTACAGGGCGAAACGAAAGTACCACCTCAAGATGCACGTGATGCGCTTGTACGACATCTACCCGTGCGACCGATGCTCCAAGTGTTACAAGCACAAGGCGACGTTGTATAGGCACCAGCTTTACGAGTGCGGCCGCAAAAAGATATTCAACTGTCCGTATTGCGGCGCCCATTCGACGCAAAGGTACGACATGAAGAAACACGTCCGGTCTCTTCACCCGGAACGGGTGCTCGAGTTCGAAGCCATCTATAAAACGTTGTACGACAGGAAAAGATACTGCTGA
- Protein Sequence
- MVLFFAKSYYRLHLFPSLGRSELRYSCDRCGRHYRYIGGLNQHKKFICGKKPQFVCWFPGCVYRTKLKFDLNKHMRNIHKLAAAKRHSFVGFYECASCNKSYKLKGSLDNHKKYECGKEPAFKCPFCTYRCKQKGNLKAHISRKHSYHEDINSYLNPSVKSNSALYCSKRYKHRESLHKHLKYECGKEPSFKCPHCPYKAKFKFNLKKHVASRHSDSYLDNVVAAWKYVLTLEGRYGCRRCGCSYKRKQHFLRHVNHECDNQRHFICYNCSRGFRQKYHLHRHLLSGTCFKSAKKHDFMIACKNCGRLYKLRTSLNRHLKFECGLAPKFKCLVCSYATKQKINAVTHMIVVHGIRKEDIVFDLRSYKHKFHLRSHQKYECGKKPAFECAVCKKRFHHQFLLNAHVKQTKCSFVCPTCYKAYRHSQSLYNHTKFECGQLPQFTCKFCPYRAKRKYHLKMHVMRLYDIYPCDRCSKCYKHKATLYRHQLYECGRKKIFNCPYCGAHSTQRYDMKKHVRSLHPERVLEFEAIYKTLYDRKRYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -