Cfor015058.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- zag-1
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000008.1:9201031-9202527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.021 15.6 2.3 2 23 115 137 114 137 0.95 2 10 8e-05 0.0065 17.2 1.1 2 23 211 233 210 233 0.94 3 10 4.8e-05 0.0039 17.9 1.9 1 23 239 261 239 261 0.99 4 10 0.012 0.97 10.4 3.3 1 23 267 289 267 289 0.97 5 10 0.00066 0.053 14.3 1.3 1 23 295 318 295 318 0.95 6 10 1.1e-05 0.0009 19.9 0.1 1 23 326 348 326 348 0.98 7 10 1.2e-05 0.00093 19.9 3.5 1 23 354 376 354 376 0.97 8 10 0.00088 0.071 14.0 0.5 1 23 382 406 382 406 0.96 9 10 3.4e-05 0.0027 18.4 0.8 1 23 420 442 420 442 0.96 10 10 3.5e-05 0.0028 18.4 4.4 1 23 448 471 448 471 0.98
Sequence Information
- Coding Sequence
- ATGTCGACATCGAGCGCCTTTTGCTGTATTTGCATTGAGACTGCAACGAATCTCGTCAGCGTGTTGCAAATCGACGAACGTGAcacaaaatatgttaaaaaattaaaagtttgtgAACCAAACCAGgATTGGGAGAGCGAGCAGCTTAGCATTTGCAAACTTTGCATTGGTCGACTGGATCtggcatatatttttattgaggaTTGCCGTAAAAGTGAAACTTTGAGGAACCAAAAATTGTTACAGCTTAGGGACAAAAATAATGTGGGAGAATTCATTAATCTAATTGAGTGTGATTTGAAAGAAGAATCGACGTGtaaggaaaaatcaaaaaatatattagaatgTGATACATGCAAGAAACAGTTCAAGCAGAAACGCTTTCTTAAGCTACATATAACCCGGATTCAtagtattaaaaagaaaataattgaagttAATGAAAAAGTGGAAGTGAGTGAAGATAAGGAAAACAGTGAGTTAGAGTTAATTAAAACTGGCAGCGATAGTGACTGTGAtgatgaattttttgaaaatggaggttttgatgataataatataCCTAGTGATGAGGAAGTAATAAGGCAACCTAAACTTAGAAAAAAGTATGCCAAAAGGAAAGATCCATTGAATTGTGAATATTGCGGCAAACTCTTTAATCGAAGACAACATTGGTCAGCTCATATAAGAGCTAATCACACATTTGAGAAGCCCTACCAGTGCAGTCTATGTGAAGCTAGTTTTATTAATTCCCACAGTTTGTTGGTACACAAAAGAAAACACAATAATGAGAAACCTTATATATGCAGCTCTTGTGGCAAGAGCTTCGTGTGCTCAGGGGACTTATACCACCATagcaaaattcatttaaataagCGGGAATACCAGTGCAATGTATGTGAAAAAAGATTTAACACAACCAGTATTTTGCGCACCCATAAGATTGTTAAGCATATGGACCCCAAGGAATGGAAATATGCCTGTTCAATCTGTGATCGGCGGTTCCCCATAAACAGTGGTCTCGCTATCCACATGAAACGTCACGCCGGCGTTAAAGACTTTTCCTGCCATATCTGTgacaaaaaattcttcaacaaGTCTGAAGTTACTAAACATGTTCTAAGCCACTCAAGCGAGAGGCGCTTCAAATGCCCCAATTGCGAAGAAAAGGAGTACAAAAATCGGGAAGGGCTTAGAAAACACCTGAAGCTTGCCCACGACATTGGCAACTGGAAACCTCCCAAGCAAGACAAAAAGTTCCTTTGCCCTATGTGTCCCAAActgttcaattttaataataagcTGCAGAGACATATACTGACTCATACAGGAGAGAAACCTTTTAAGTGTGAGCACTGCGACAAGAAATTTATAGATAATTACTACCGAAAAGTCCACTTGAGAAAAGACCACAAGATCGTGGAGTGTGATGAAAACAAATACTAA
- Protein Sequence
- MSTSSAFCCICIETATNLVSVLQIDERDTKYVKKLKVCEPNQDWESEQLSICKLCIGRLDLAYIFIEDCRKSETLRNQKLLQLRDKNNVGEFINLIECDLKEESTCKEKSKNILECDTCKKQFKQKRFLKLHITRIHSIKKKIIEVNEKVEVSEDKENSELELIKTGSDSDCDDEFFENGGFDDNNIPSDEEVIRQPKLRKKYAKRKDPLNCEYCGKLFNRRQHWSAHIRANHTFEKPYQCSLCEASFINSHSLLVHKRKHNNEKPYICSSCGKSFVCSGDLYHHSKIHLNKREYQCNVCEKRFNTTSILRTHKIVKHMDPKEWKYACSICDRRFPINSGLAIHMKRHAGVKDFSCHICDKKFFNKSEVTKHVLSHSSERRFKCPNCEEKEYKNREGLRKHLKLAHDIGNWKPPKQDKKFLCPMCPKLFNFNNKLQRHILTHTGEKPFKCEHCDKKFIDNYYRKVHLRKDHKIVECDENKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -