Cfor012557.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000006.1:35056457-35061577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1e-06 8.2e-05 23.2 1.0 2 23 23 44 23 44 0.97 2 19 1.6e-06 0.00013 22.6 1.1 1 23 49 72 49 72 0.97 3 19 1.3 1e+02 4.0 3.6 1 23 76 101 76 101 0.85 4 19 0.0025 0.2 12.5 4.4 1 23 107 129 107 129 0.94 5 19 0.00022 0.018 15.8 0.4 1 23 157 179 157 179 0.98 6 19 4.6e-06 0.00037 21.1 0.4 3 23 187 207 186 207 0.98 7 19 0.00074 0.06 14.2 0.6 1 23 213 235 213 235 0.99 8 19 1.6e-05 0.0013 19.5 2.2 1 23 241 263 241 263 0.98 9 19 0.0046 0.37 11.7 1.0 1 20 297 316 297 317 0.96 10 19 0.032 2.6 9.0 4.4 1 23 324 346 324 346 0.98 11 19 0.077 6.2 7.8 1.5 1 21 498 518 498 519 0.95 12 19 0.18 14 6.7 0.2 3 21 527 545 526 548 0.87 13 19 0.016 1.3 10.0 1.5 3 23 554 574 553 574 0.97 14 19 0.014 1.1 10.1 5.1 1 23 580 603 580 603 0.96 15 19 3.1e-06 0.00025 21.7 1.6 1 23 608 630 608 630 0.98 16 19 0.015 1.2 10.0 0.5 1 23 686 708 686 708 0.97 17 19 1.6 1.3e+02 3.7 0.7 1 23 810 832 810 832 0.93 18 19 0.048 3.8 8.5 0.2 1 23 844 866 844 866 0.97 19 19 0.015 1.2 10.1 0.5 2 21 1191 1210 1190 1211 0.94
Sequence Information
- Coding Sequence
- ATGACGAGCAATAAGATAGATAGAGATAGAAGATCGGTCGAACTCTGTTTCAGAATACCCGCAAATACTTGTAGCATATGTTGGAAATCGTTTTCCAGCCCAAGTAACTTGCGGGTTCATTCGAGGAGGCACGAGGACAAATTCTACGCTTGTCAATTTTGCGACGAAACGTTCGTATACAAAAGCAACCTCACGCGTCACCTGAAAAGGGCGCACGTCGATCAGTACAAGTGCTTGTGCGCGCACTGCGACCAAAAGTTCCTCACGGAATTGCAATTGACGCGCCACGTGGAAAACCGCCActttaataaattcaaattcgaaTGCACCAAGTGCGACCTGCGGTTCGATTATTCGTACCAATTGAAGAAGCACAACGAGCACCACCGAGACGACTCGGTCGACTGCAAGAGTTGCAGCACGGGGGAGAGCTGCGACGATCACCAAGACGTCGTTATCAGGAAGCAATACGTGTGCGGATGGTGCGACAGGGTGTTCCTGACCAATTCCAATTACAAGAACCACCTGAAGGCGCATCGAGacgagaagaaaaatatttgcgaGGTGTGCGGTAAAAACGTGTCTTCGAAGGTGAGCCTAACCAATCACATGCGCACGCATACCGGCGAGAGGCCGTTCAAGTGTGAGTTTTGCGCGAAAGGCTTCGCTCAGAAGACGGTGCTCGAGATGCATAGACGCGTGCACACCAAAGAGAAACCGTTCATGTGCCAGACTTGCGGCAAAGGGTTCAGTCAGAGAACTCCGCTCACCATCCACATGCGTCATCACTTGGGTATTACGCCGTACGGTTGCGAGGCGTGTCAGAAGAGGTCGATTGACGGCTGCGACATGATCGACATCGACGACGACGACACTTCCGCAGATCAGTACCAGTGCGGCATATGTTCGAGGTTGTTCGCGACTAAAAGTAAATTCCTACGACACCACGTAGCGATGTTCGGCAAACGGTTCACGTGCTGCAAATGCGGCGCCATCTTCTTTACCTCCACCGAATTGTACGAGCACCACGATACCCATCGCGACCTTTCCGAAAGTATCATCTACGAAGACGACCAGGTTGCCGAAGACGGTATCGTAGAAGAGCTCGTCCTCAACTACGGCGACCACGAGGAAATTATAGAAGTCAACCAGCCGAGCGAGCTGCTTTACATTCTCGACGACGAAAATAATTGCGTCAACGAGGTGGTTATCCAGGAGGACGAGCGCGGCGCACCTTTAGAAAAGACGGGGGATCCTGTATCCATCGTGAATTTGGAACACGGTTACATGTTGCCCAGCGCGAAGGGACTTTTAGCCTCGAACGTAATCGTAGACAAGGACGTCGCGTTGCCCATGAAGACGGCTACCAAACGGGTCTACTCCGTGCCGAAGCCTAGGGCGCCGCAGCCGAGGAAGAGGCACGAGGTGCCGGACTTCTCGGCCGCCAATTACGTTTACGTCGAGGCGAGCGACGACGTAGACGTCGCCCACTACAAATGCCTGAGGTGCGAGCAATTGTTCATAAGCAAGTTCCAATTTTTCCGACACATCGAGAAGGGAAAATGTTACGTGAACAATTGCGACGCTTGCAACGCGACGTTCACCAACAACAGCGGCTTCTACGAGCACTACGTGGCGGAACACACGGATCGCGCGATATGCAACTTTTGTTTCCGAACGTTCATGTACGAGAAGAACGTCAAAGAGCACATGCTGAGGCACCTGGATCAGTTCCGGCACCGATGCGAAAAGTGCAACAAGGGGTTTTATACGGTGAGAGAGTACCGTAACCACTATAAGAACAGGCACATGGGAATCAGGCACAAGTGCGAGGTGTGCGGCAGGAGTTTCGCCGACGAGTACTACTTTAAGAAACACATAGCTACGCACTCGAAAGTCGCCAAAATCACCGTTCTCCAGCTCAACGAGCACGACGACGACCGATTGAAATTAAAGTGCACGGTCCAGCTCGCCGACATTAGCAAACAAGTTGGCTACCAAAAATACCTCGACCGCCTGAACGAGCAGTCTTGCAGCGACCAAGGCCGCCGGAAATATACGTGCTACATGTGTTTCGGCAAGTTCTCGAACAGCCAAGCTTTAGAAATCCACAAGATAATCCATTTGGACGAAGAAAACAGCGACGCGTCGGATGTCGAACCGGTAAATTCTTCGGTGACTTTGGATACGGACAGCGATTTCAACGCAGATGATCTGGAGGAGCAGGAAAGCGAAAACGAAGATGCCGCACCCGTCGTCCAACGACCGCAACCTGCAAAGTGCGAATCGCCGCCCCGTCTGGTCGTTCAGGATCTCCAACCGCCTTCTAGCGAAGACAACGCGAATTACAAGTGCATGTCGTGCGTGGTGGAATTCGCTTCTCATAACGATGTCAGAAAACACCCGCACATAAATTATTTCTGCAGGTACAATTGTCGGCCGTGTCGCAAATATTTCGGCACTAGGGGCGGATTCCTCGACCACCTGATGCAGCACACTCCGCCACCTAGCAGCGAACCCGTCGTCAGCTTTAGTTGCGATACTTGCTACGACGCTTTCGCGTCCGATGCGGAGCTTCGAAAACACCTGCAGCTCCACGAGCAAATGGACAACAGGAACGACACGATAGTGATCGACGACGAGGACGAAGTACCTAACGGCCCGCGTATGGCGACGACAACCCAGCCGAAAAAGTCGAGACAGATGAACGATCGGTTGAGGAGAATTTACTCGACTTCGAAAACGAAGTATATCGAGATTAGACCCAAACCGCCTGACAAACCATCCGAAGGCTCGGGAGATGGTTACCAGACGCAGCTGACCGGCGTCATTAGGAAGATGCTTGCGCCGCAATCTAAAACTGCGAAAGTTCACGAGGAACCGAAACCCAATCAACCAGATCCCACCTCGGGGCTTATGATGGCACCCCAGAAGCCTCCGATTAAGAAGTTTGCCATTAAAAAACCTACGGTGATTGAACCGACGAGTCCCCGATACGTTCCGATGAATTCGATCGCGCACCAGTCTCAAATAAATTACGTTTTGGTGAATCAGGCTCCTCCGTCCACTTCTGCCGCCCCCAATTACTTTTTGATCGACTCCAGCGGCGTGGTCCAGGGCGCAGCCCCAAATCAGTTCATTGTCAATCAAAAGGTCAGCAGCGGGGGCGTCGTGGTCAACTCTCAACCTAACGTGGAACAACAGCCCATTATTTTAAACAGTAGCGTGGCTAGTCAAGCGCCTACCAACCCGATGTGTATCGTCCTGTCCGAACGAACCGCGGCAAAGCAGACACCCCCTCCATTTATCACACAACCTTCGCCCACCTCCCAACCGACCAAAGAAGCCCCCAAGTCGGTCTACGAGAATGAATTCGTGAAATTTATTCGCAAGCCTGCGCAACACGTGTCGACCCTACGTCAGTACAGGAGAGTCGAGAAGATAACGGAGACGTCGGACGACGTGACGATCGTCGAAGATAGTGTCGGGCGACCCGCGCCGGCCAAGGCGAAGATTTTTGTGAAGAAACTGAGCGAGTTGAAAGCACCGAGCGGTGGGCCTGTTCTCGTCAAATGCAGCGAATGTCACGAAAAGTTTGAGGACAAGGCAAAGTGGGATCGGCACGTGCGCAACAGGAAATCGTGCACCCTGTGCGGCTTTAAGCATTGCCTAAAGGCGATATTAAACTTGCATTATTTCGAGCTGCACGACAAGCACTGTTGCATGAACTGCCCATATATAGCCGATAATTTCGGGGATTTAACATCTCATCGGCATCAGGAGTGTTACGTTAcgatgcaagcgtcgcgtcgaaTGTACAGACCTCGAAACGTTGCTTTGAATACGGACGGGGAAATTACGGTCCAGACGATTTACCAATGA
- Protein Sequence
- MTSNKIDRDRRSVELCFRIPANTCSICWKSFSSPSNLRVHSRRHEDKFYACQFCDETFVYKSNLTRHLKRAHVDQYKCLCAHCDQKFLTELQLTRHVENRHFNKFKFECTKCDLRFDYSYQLKKHNEHHRDDSVDCKSCSTGESCDDHQDVVIRKQYVCGWCDRVFLTNSNYKNHLKAHRDEKKNICEVCGKNVSSKVSLTNHMRTHTGERPFKCEFCAKGFAQKTVLEMHRRVHTKEKPFMCQTCGKGFSQRTPLTIHMRHHLGITPYGCEACQKRSIDGCDMIDIDDDDTSADQYQCGICSRLFATKSKFLRHHVAMFGKRFTCCKCGAIFFTSTELYEHHDTHRDLSESIIYEDDQVAEDGIVEELVLNYGDHEEIIEVNQPSELLYILDDENNCVNEVVIQEDERGAPLEKTGDPVSIVNLEHGYMLPSAKGLLASNVIVDKDVALPMKTATKRVYSVPKPRAPQPRKRHEVPDFSAANYVYVEASDDVDVAHYKCLRCEQLFISKFQFFRHIEKGKCYVNNCDACNATFTNNSGFYEHYVAEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEKCNKGFYTVREYRNHYKNRHMGIRHKCEVCGRSFADEYYFKKHIATHSKVAKITVLQLNEHDDDRLKLKCTVQLADISKQVGYQKYLDRLNEQSCSDQGRRKYTCYMCFGKFSNSQALEIHKIIHLDEENSDASDVEPVNSSVTLDTDSDFNADDLEEQESENEDAAPVVQRPQPAKCESPPRLVVQDLQPPSSEDNANYKCMSCVVEFASHNDVRKHPHINYFCRYNCRPCRKYFGTRGGFLDHLMQHTPPPSSEPVVSFSCDTCYDAFASDAELRKHLQLHEQMDNRNDTIVIDDEDEVPNGPRMATTTQPKKSRQMNDRLRRIYSTSKTKYIEIRPKPPDKPSEGSGDGYQTQLTGVIRKMLAPQSKTAKVHEEPKPNQPDPTSGLMMAPQKPPIKKFAIKKPTVIEPTSPRYVPMNSIAHQSQINYVLVNQAPPSTSAAPNYFLIDSSGVVQGAAPNQFIVNQKVSSGGVVVNSQPNVEQQPIILNSSVASQAPTNPMCIVLSERTAAKQTPPPFITQPSPTSQPTKEAPKSVYENEFVKFIRKPAQHVSTLRQYRRVEKITETSDDVTIVEDSVGRPAPAKAKIFVKKLSELKAPSGGPVLVKCSECHEKFEDKAKWDRHVRNRKSCTLCGFKHCLKAILNLHYFELHDKHCCMNCPYIADNFGDLTSHRHQECYVTMQASRRMYRPRNVALNTDGEITVQTIYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -