Cfor009424.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- zfpm1
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000005.1:12602652-12609373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6 4.8e+02 1.9 0.1 3 23 8 28 6 28 0.90 2 14 0.0047 0.38 11.7 0.1 2 23 590 612 589 612 0.90 3 14 0.00055 0.044 14.6 0.1 1 23 622 644 622 644 0.96 4 14 2.2e-05 0.0018 19.0 2.1 2 23 647 668 646 668 0.97 5 14 1.5e-05 0.0012 19.5 1.3 1 23 674 696 674 696 0.99 6 14 0.00038 0.03 15.1 8.7 1 23 702 724 702 725 0.96 7 14 0.07 5.6 8.0 1.4 6 23 739 756 737 756 0.97 8 14 0.00037 0.03 15.1 3.8 3 23 763 784 762 784 0.97 9 14 0.023 1.8 9.5 0.1 3 23 797 816 796 816 0.97 10 14 0.00016 0.013 16.3 1.4 1 20 822 841 822 844 0.92 11 14 6.3e-05 0.0051 17.6 0.4 1 23 852 874 852 874 0.99 12 14 0.002 0.16 12.8 3.2 1 23 880 902 880 902 0.97 13 14 5e-07 4e-05 24.2 3.3 1 23 908 930 908 930 0.98 14 14 0.002 0.16 12.9 6.2 1 23 936 958 936 959 0.95
Sequence Information
- Coding Sequence
- atggAAGTGATCAATATAATATGTCCTGTGTGTACCCTATATTTAAGACCTGGTATCACTTTGAAACAGCATTTGACTAGCCATCCTAAACAAAAAGTGATTGATGCATTGGTTAAGCTAGCTGGAACTGATGAACTACAAAAATTGCCTAGTTCTTCTCGAGAAGGAGAATCTTCTAACACTTTTCACCACAGCAGTGTTTCTTCAAATCTAAACCAATTGCCTGTGGGCCACTCATCAAATATGAGTCCTTTTCCTGGAAATCATGTGTTTATCTACCAACAGAGCATGAGTACAACATCGCCTCATCAGTCAAACGTCCTCAACATGAACCCATTAAATCAGCAGTACTTAGTACCAGCCCCTGCTTATTTTAACTCCCAAATGATGCCTTATGTTTATCAGCAACAACAAGTTATTATGTCTAGCAACACTATTCCAGCCAATATTAGGGCTTTGCCATTCGAATTGCCTGGTTCTTCACAAATTAATGAGGTTACTGAACAACACTGTCCACAAGAAACATCAAATGATGGACATGCTAAGTCACAAATTGAAAAAGCAGCTGATACAATTGATGCAGTGGAGGTGTCAAGTGATGATGATTTAATTCAAGAAATGGAGCATTCTAGTCAGGAGGACGGAAATGAAAGCATAAAAGATGATGAAGAAGTTCCGAAAATTCAGATAGATGAGAatgattatgaaaaaaaaagtagtgaCTTTGAAAGTAAAGATCTTTCTTCTTTGAGCAGTGATAGTTTAGCAAGCTTTAATGAGTCTCACAGTGAGTATGAACATAATCAAGAAATTGACCATGAAGAATGTGTTGGCACCCCCTACTCTCAGCATAATTCTGACTGGAGTTTAAACCAAGAACTGGACAAAGCGTGCCAAACTCAAGCAGTAGTCAACTTATCGCCAAAATCAGTTCATGGGCAGAACCAAGGGAATGATGCTGAGGTGCCTCAAGATGGAACtgaattcatttattttaatcaacAAAATGATGTATCTGTTTCCTTTACATCAATTGACTTAGGTTCTGGAAGCTATGAGCAAGCAGAACCCATCTATACTTCAGTGAACATATTACATGGTAATGATCCAGTAGATTTTGTGACAATGGAAGATATAGATGGCATGCAAgtaattattaatgattttaatacATCTCCTATTGTTCCTCAAGCAGATACTATAGAACATGAGCGTCCACGAATTTTAATGACTTTAGGAGAAATGACCAGTAATAATTCAGAAGAAAATTCAGTTCCAAATGTTAACATTGAGTCTGATGAGAAAATGCCACCACGGGGTGAGCTCTCTGGGCAAGAAAGCATGGGTAGTGCTAGTGACATAGTTTGGAATACTACGTACCAAAGCCAGGTGACTAATAACGAGTACAATAATTTGTGGGAGGATAGCTATAGTTTACATGCTGGACCTCTAAGGGAGAACCGGCCCGAGGACATTGACAAAAAGACTACAGTTGTAGTAGAGGATAGAAGTGTACCTCAGGATGAACAACAGTGTGACGATCGTAAGGCAAACATAATAGGGCTTGATGTGGGAAGAAATAGAGTTAAAAAGCTTGTGATTAGGCCAAAAAAACCAAATACTTTTAATAATGTATTTACAAACAGGCTAAAAGTTGAACAATTAGAAAGGAATGATGAAAATGCAGAGTGCAATATTATTGGACAAGgAGCTAAACATTCTCTTGAAGATATCAAAATTGATGAAACTTTACCCGCCGTCAGCATTGTATGTCAACTTTGTACTATCACATTCAGCGATAGGAAGATGTTGAAACTACACGCCATACAAGCCCATAATATACTGAaatccaaaaaagaaaaatacttatGTGCAATATGTAATGAGCAATTCGCCAACGAGTATGAGTTTACCGTGCATCTGAAGGTCCATCCTCTTGAGTGCCGAATGTGTGGGAAATTATTCTACCGGCGTCAGAATTTGAAACTGCACATGAAGCGTCATCTAGGCCTCAAGCCCTTCCAGTGCGACATGTGCGACAAATCCTTCGTAACGAAACAGAAGGTGGAAGAGCACCGCAACACCCATACAGGCAATTGTCCCTATAAGTGTCACATGTGCGACGACACCTTCAAAAGGCACTCGAACCTGATCCAGCACCGGAACAGGCACCATTTGCAGATCAAAAAGAAACTTAAAGATTACATCTGTTCCTGCGGCGAAATCTTCCATTCCAAGAAGAAACTGGCATGGCATCAAGAGACACATGACCAAAAACCTAAAGCCTGCACGCACTGTAGTGAAAAATTCATACATACGGCCAGTTTAAATAGGCACATGAAACGGGCTCATAATGTGGATTGTTCAAAGGATCAGATGACAGCCATTTGTCCGATCTGCAAAGGCTCGTTCCTAAAATCTTCGCTGGACGCTCACATACGAAATCATAGCGGGCAACGGCCCTTTACATGCCTCATATGTAACAAGGACTTCACGACAAAATGGAACCTCAAACTGCACAAGTGGACTCATGCCTCCCGTACTCAAAAGCCCTTCAAGTGTAACTTGTGCAAGGCCGCTTTCATAAGGAATACAGATTATGTCGCCCACATGAACTCGCACAAGAACGTGCGACCCTATACGTGCAATTACTGCGGAGCGCAGTTTATAAGGAAATACAATTGTCTTAGACACGTGAAAGAGCACGAAAACGATAAGACTTACAATTGTTCCGTGTGCGGCAAGTCGTTCCACCGGTCTTACTATTTGAAAGACCATATGCGGGTCCATAGCGGGGTGAGACCGTTCGCGTGTCATATATGCGGTAAAACGTCAACCACCAAATCAAACCACAACAAACATGTCCAGATCCATCATGCGAGGGAACCCGTTAGTACagagaattaa
- Protein Sequence
- MEVINIICPVCTLYLRPGITLKQHLTSHPKQKVIDALVKLAGTDELQKLPSSSREGESSNTFHHSSVSSNLNQLPVGHSSNMSPFPGNHVFIYQQSMSTTSPHQSNVLNMNPLNQQYLVPAPAYFNSQMMPYVYQQQQVIMSSNTIPANIRALPFELPGSSQINEVTEQHCPQETSNDGHAKSQIEKAADTIDAVEVSSDDDLIQEMEHSSQEDGNESIKDDEEVPKIQIDENDYEKKSSDFESKDLSSLSSDSLASFNESHSEYEHNQEIDHEECVGTPYSQHNSDWSLNQELDKACQTQAVVNLSPKSVHGQNQGNDAEVPQDGTEFIYFNQQNDVSVSFTSIDLGSGSYEQAEPIYTSVNILHGNDPVDFVTMEDIDGMQVIINDFNTSPIVPQADTIEHERPRILMTLGEMTSNNSEENSVPNVNIESDEKMPPRGELSGQESMGSASDIVWNTTYQSQVTNNEYNNLWEDSYSLHAGPLRENRPEDIDKKTTVVVEDRSVPQDEQQCDDRKANIIGLDVGRNRVKKLVIRPKKPNTFNNVFTNRLKVEQLERNDENAECNIIGQGAKHSLEDIKIDETLPAVSIVCQLCTITFSDRKMLKLHAIQAHNILKSKKEKYLCAICNEQFANEYEFTVHLKVHPLECRMCGKLFYRRQNLKLHMKRHLGLKPFQCDMCDKSFVTKQKVEEHRNTHTGNCPYKCHMCDDTFKRHSNLIQHRNRHHLQIKKKLKDYICSCGEIFHSKKKLAWHQETHDQKPKACTHCSEKFIHTASLNRHMKRAHNVDCSKDQMTAICPICKGSFLKSSLDAHIRNHSGQRPFTCLICNKDFTTKWNLKLHKWTHASRTQKPFKCNLCKAAFIRNTDYVAHMNSHKNVRPYTCNYCGAQFIRKYNCLRHVKEHENDKTYNCSVCGKSFHRSYYLKDHMRVHSGVRPFACHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -