Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000007.1:30995151-31001257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.7 56 4.8 0.6 3 21 7 26 5 27 0.85

2 15 2.3 1.8e+02 3.2 0.7 3 21 34 52 33 53 0.92

3 15 0.22 17 6.4 0.1 1 12 122 133 122 136 0.90

4 15 2.2 1.8e+02 3.3 6.7 1 20 237 256 237 258 0.93

5 15 0.016 1.3 10.0 0.2 1 23 278 300 278 300 0.98

6 15 0.00088 0.071 13.9 2.5 1 23 319 341 319 341 0.97

7 15 0.07 5.7 8.0 1.0 1 23 370 391 370 393 0.88

8 15 5.8e-05 0.0046 17.7 1.1 1 23 397 419 397 419 0.97

9 15 0.0007 0.057 14.3 0.2 1 20 425 444 425 446 0.94

10 15 1.8e-05 0.0014 19.3 2.3 1 23 453 475 453 475 0.98

11 15 1.1e-06 8.6e-05 23.1 4.4 1 23 481 503 481 503 0.98

12 15 8.4e-05 0.0067 17.2 7.4 1 23 509 531 509 531 0.99

13 15 5.1e-06 0.00041 21.0 0.2 1 23 537 559 537 559 0.98

14 15 4.9e-06 0.00039 21.1 0.3 1 23 563 585 563 585 0.98

15 15 4.4e-05 0.0036 18.0 0.1 1 23 593 616 593 616 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.7	56	4.8	0.6	3	21	7	26	5	27	0.85
2	15	2.3	1.8e+02	3.2	0.7	3	21	34	52	33	53	0.92
3	15	0.22	17	6.4	0.1	1	12	122	133	122	136	0.90
4	15	2.2	1.8e+02	3.3	6.7	1	20	237	256	237	258	0.93
5	15	0.016	1.3	10.0	0.2	1	23	278	300	278	300	0.98
6	15	0.00088	0.071	13.9	2.5	1	23	319	341	319	341	0.97
7	15	0.07	5.7	8.0	1.0	1	23	370	391	370	393	0.88
8	15	5.8e-05	0.0046	17.7	1.1	1	23	397	419	397	419	0.97
9	15	0.0007	0.057	14.3	0.2	1	20	425	444	425	446	0.94
10	15	1.8e-05	0.0014	19.3	2.3	1	23	453	475	453	475	0.98
11	15	1.1e-06	8.6e-05	23.1	4.4	1	23	481	503	481	503	0.98
12	15	8.4e-05	0.0067	17.2	7.4	1	23	509	531	509	531	0.99
13	15	5.1e-06	0.00041	21.0	0.2	1	23	537	559	537	559	0.98
14	15	4.9e-06	0.00039	21.1	0.3	1	23	563	585	563	585	0.98
15	15	4.4e-05	0.0036	18.0	0.1	1	23	593	616	593	616	0.97

Sequence Information

Coding Sequence: ATGGCGCTATCCCTCACATGTCCTTTATGTTGTAGCGAAACATTTCCGAATACAACTTCTCTTAAGTATCACCTGCTGAGTATCGTGGGCAACATTCTGTGTTCCTCTTGCAACAAGAGGTGCGATAGCATTTTAGAGTTGATTCAACATTTAGAGAAGGAATGCGTTGATCAAAAGTCTATGAAAATGCTTGGGAACATTAAAAAGGAACCGGAGGTGAACAGTGCCCCTCACCAAGGAATTTCCGACAGAAATACGGAACCTGCAGTAGTTTTCGTCGATTCCGGCAGAATAAAGCAGGAAGTAGAACCTGAAAGTAATGATAATGCGATAGAAGGACCTGTCGGTGATCCAAATTTGCAGTATTCCTGTGAGATATGCAATATTAGTTTCAATTCCATCGAGGAGCATTTGGCAAAATACCACGAAGGAGAGGAAGTGCTGTTGGAAACTGATAATGATGAACCTTTCCAAAACGCTAACTCTTCTGATATGTTCGACGACGATAGTCAAGGTACCGAAAATGAATTGGAGGACAATGCTGCTAGTGCGGAAATCTCTCATAGCAAAAACAATCAATTTCAAATTGACGAAAATAATGAGAATGAAGAACCACTGACTCACAAATATCTGTTCGACGGTGAGTTGACCAAGCTTACCGAGGAGCAAGTCGCGAATATCGAGGACAAGTCGAAAATTATAGAAATTCATTGTTGTCCGGTATGTTCCTTGCAATTTCCCAATCTGGGCCATTACCATAAGCACAAATGTGCGAAAAAGAAGATGACCAAAGAAAGAAGAAGACATCCCAAACCCAAGGAAGATACGAGATACAGGTGCGCGTTTTGCCAAGCCATTTACATGAGCCTCATAGCCCTGAACGATCACATGAAGTCCCATTTGGTGCAGGACGAGTCGGgtAGAGTCATAAAGAGAACTATAACGTTAGCCCCTCATGTGTGCGAAGTATGTAACACCCAGTTTCCATCCTTCAAATCCCTTCGGTTACATAAGAGGATGCACGATCCTGTACAGCAGAAAGAGATCGAACCTCCGGTAACGTACTCTATCGATAACCAAGATGATACTCCCAACGAACGAGAGATGTTCGAGTGTACCGTTTGCGATAAAAAATACGATAAAGAATACGAACAAGTGCACCTCAAATCCCATCAAAACGTTGACTATTTCGTTTGCTCCGTTTgtaacaaacagttttatacCAAAGAGAATTTGGATATGCACACGAAAGCTCATTCGAACGCTAAAAGGTTCATATGTTCGTATTGTAAAAAGCCCTTTACCAATGACGAGGCCTTGCAAGATCACGTTACGAATCGGTGCACGAAAAGGCTTTACGAGTGTCAGTACTGCGGCAGGAGGTTCTCTAGGCCTCACGAAAAGGTGAAGCACGAGCGTATTCACACGGGCGAAAAGCCCCACGTGTGTCAGATCTGTGGCAAATCTTTCCGCGTGAGTTACTGCCTAACATTGCACATGCGTACCCATTCTGGAACCAGGCCCTACGAATGTCAACATTGCAACAAGCGCTTCAAGTCTTACAGCGTGTACAACCACCATATGATGACCCATTCGGACGCGAGGAACTACAAATGTCCTTTATGTCCGAAAGCCTTTAAAACCAGCGTCCAACTGGCAGGTCACAAGAACAGCCACACCAAGCCGTTCACTTGCACGGAATGTAACCGACCGTTTTCTTCCCTCTATGCGGTGAGGGCCCATATGGAAACACACAAGCGAGAGAACAACCTGAAATACGACTGTTGGCTATGCGGCGCGACCTACGCCAGGTCGTTCGCCTTGAAAGACCATATGAACACCGCCCACTTGAACGACAACGCAGCAGAGCAGAACGGCGACGGTGTTCTCGTGGAACTCGAACCGGACGAACAAGAAACGGAGCAAGTGGAAGAGGAGGAAGCGGAAATGAACATGGAAGAAAACAGTTTGGAGGAGGACCATCAGGAGGTGGAGGAACTTGTCGAGGAGTATCACTCAACGCAAGACGATGCGACAAACGAAGCGGAACCAGGCGACGTTACCGAATCGTAA
Protein Sequence: MALSLTCPLCCSETFPNTTSLKYHLLSIVGNILCSSCNKRCDSILELIQHLEKECVDQKSMKMLGNIKKEPEVNSAPHQGISDRNTEPAVVFVDSGRIKQEVEPESNDNAIEGPVGDPNLQYSCEICNISFNSIEEHLAKYHEGEEVLLETDNDEPFQNANSSDMFDDDSQGTENELEDNAASAEISHSKNNQFQIDENNENEEPLTHKYLFDGELTKLTEEQVANIEDKSKIIEIHCCPVCSLQFPNLGHYHKHKCAKKKMTKERRRHPKPKEDTRYRCAFCQAIYMSLIALNDHMKSHLVQDESGRVIKRTITLAPHVCEVCNTQFPSFKSLRLHKRMHDPVQQKEIEPPVTYSIDNQDDTPNEREMFECTVCDKKYDKEYEQVHLKSHQNVDYFVCSVCNKQFYTKENLDMHTKAHSNAKRFICSYCKKPFTNDEALQDHVTNRCTKRLYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKSFRVSYCLTLHMRTHSGTRPYECQHCNKRFKSYSVYNHHMMTHSDARNYKCPLCPKAFKTSVQLAGHKNSHTKPFTCTECNRPFSSLYAVRAHMETHKRENNLKYDCWLCGATYARSFALKDHMNTAHLNDNAAEQNGDGVLVELEPDEQETEQVEEEEAEMNMEENSLEEDHQEVEELVEEYHSTQDDATNEAEPGDVTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -