Cfor015385.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000008.1:14927442-14932712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 2.2e+02 3.0 0.2 6 23 140 158 140 158 0.90 2 13 0.074 5.9 7.9 0.5 2 23 189 210 188 210 0.96 3 13 1.5e-05 0.0012 19.5 3.3 1 23 216 238 216 238 0.97 4 13 0.00017 0.014 16.2 3.3 1 23 244 266 244 266 0.97 5 13 0.086 7 7.7 3.1 2 20 268 286 267 288 0.93 6 13 1.6e-06 0.00013 22.6 2.7 3 23 336 356 334 356 0.96 7 13 0.00019 0.015 16.1 1.1 1 23 362 384 362 384 0.99 8 13 1.7e-05 0.0014 19.3 0.2 1 23 390 412 390 412 0.98 9 13 6.9e-07 5.5e-05 23.7 3.4 2 23 418 439 418 439 0.98 10 13 4.6e-07 3.7e-05 24.3 4.9 1 23 445 467 445 467 0.98 11 13 1.2e-06 9.8e-05 22.9 1.2 1 23 473 495 473 495 0.98 12 13 1.4e-05 0.0012 19.6 2.0 1 23 501 523 501 523 0.98 13 13 0.0043 0.34 11.8 1.6 1 23 534 557 534 557 0.95
Sequence Information
- Coding Sequence
- atgaagtcATTGTTGGAAAATAATTCGGAAGTTACCaatcttttaactaaatttgcAGCCGTTTCCAACTTAGAGATAGAGTTTAATGTCAGCTGTGCCCCTTATTTATGCCTTGTCTGTGAGGATAAAATTAATCGCGCTTATGAGTTTCAAGTTATGTGTAAACAATCCtacaaatttattgaaaatttagtgaatggaaACTCAAATTGCACGAACTTGGATGCTGATTCGTCAGCTGATCACATAACAAATCTCGAATCATCTGAAGAGAAAGATCGGATTGGTCctgttgaaatttcaaaaaaaaacaatgcgaATCAGCAAATGAGATTAAGCCAATATTCAGTAGATGAAGTTGACCGGGCTCTCAACCAAATAAGAGAAACTTTCAACAAACATGTGACATGCATTTGCTGCAATTTCATTGCGACCAATAGTAGAAGTTTGTCAGTTCATATGACAAGGATTCACAGGGAATTGAAGGATTTGTGGTGCTCTTCTTGCAATCAGTTTGTGAATGACTTATTGGAACACGGTAGACAAGAACATTCAGAGGATTTAAGATGTCCATTTTGTCTAAAAATTATGTCTAACATGAGCCATTTGATGGAGCATGTAGCTAGTCATTCAGCAGAGAGAATACATAAATGCTTTATTTGTCAAAAGTCGTTTATATCTGCCCGCAATTTGAAGAAACACAAAGAGATACACGACAAAGACAAGTCGTTTCGATGCAAGGTTTGCCACAGGAACTTCACCGAAAGCAAGGCATTAATGACCCATCTAAAGGATCATGTTAAATGTGAAACGTGCGAAATGGTATTTGAAAACTCTGAGCTGTTTTGCAAGCACTCCTGTCGCGgtgaaaaaatagaaattgaaaGTGGCAACAAAGAAGCTCAGAATTTCTGCAGGCAATGTAACAAAAAAGTGAGAAGTCTGGCAGCACACGTTAATAGAATTCACACGAAATCTGAAAGGGGTGCCGAATTCAAACACCTGTGTCCCCATTGCGGTAAACAATTTAGAACGGTTTCCAAATTGAATGTGCACATCAGGGTGCACACAAACGAAGCGCCCTACAAATGCCAATATTGCGATCGCAGGGTTAAAACTAGGAACGTTTTGGTGGTCCACGAACGCACCCACACAGGAGAGAAACCCTACATATGCTCCGTTTGCGGAAAGGGCTTCTCTCAATCAACCATTCTAAATACCCACTTGCGAATTCATACGGGTCGGCCGGAAAAGTGTACCATTTGCGACAAACGGTTTTGCAGAGCTGCTGAATTGAAACTCCACATGAGAAAACATACTGGTGAAAAACCTTACTCTTGTAACCATTGCGGTCAGAGCTTCAAACAAAAAAGCCATTTGGTCGAGCACACTAGAATTCATTCCGAAGACAGGCCCTACAAGTGTGAATACTGCAAAAAGGCGTTTAAAAACTTGGGAACCCTCAGGACTCACGTGCAAATTCATTTAGGTCAAAAGCCATATAAATGTAGCCAGTGCCCGTACGCGTGCCGTCAGCCATATAGCCTGACCCAGCACATGCTACTACATGATGACGACAAACCGCAACCAGATAATCCGTATATTTGCTCCATCTGTCGAAGGAGTTATATCACTGTAGCTCATTTCACTGCGCATTTTATTAAGTATCATAGTGAGTCTTCGGGAAGAACCATCAAAGAAGTGATGGAGAAAGGGGAGAACAATTTGGAGGCCCATAGGCAGTCCTCAGATGATGATACTGTCGATGCCAGGTCGGACGACTCCCattatgtttgttaa
- Protein Sequence
- MKSLLENNSEVTNLLTKFAAVSNLEIEFNVSCAPYLCLVCEDKINRAYEFQVMCKQSYKFIENLVNGNSNCTNLDADSSADHITNLESSEEKDRIGPVEISKKNNANQQMRLSQYSVDEVDRALNQIRETFNKHVTCICCNFIATNSRSLSVHMTRIHRELKDLWCSSCNQFVNDLLEHGRQEHSEDLRCPFCLKIMSNMSHLMEHVASHSAERIHKCFICQKSFISARNLKKHKEIHDKDKSFRCKVCHRNFTESKALMTHLKDHVKCETCEMVFENSELFCKHSCRGEKIEIESGNKEAQNFCRQCNKKVRSLAAHVNRIHTKSERGAEFKHLCPHCGKQFRTVSKLNVHIRVHTNEAPYKCQYCDRRVKTRNVLVVHERTHTGEKPYICSVCGKGFSQSTILNTHLRIHTGRPEKCTICDKRFCRAAELKLHMRKHTGEKPYSCNHCGQSFKQKSHLVEHTRIHSEDRPYKCEYCKKAFKNLGTLRTHVQIHLGQKPYKCSQCPYACRQPYSLTQHMLLHDDDKPQPDNPYICSICRRSYITVAHFTAHFIKYHSESSGRTIKEVMEKGENNLEAHRQSSDDDTVDARSDDSHYVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -