Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000003.1:30146334-30153782[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.1e-05 0.0025 18.5 0.7 1 23 146 168 146 168 0.95

2 14 3.8e-05 0.003 18.3 0.4 3 23 176 196 175 196 0.99

3 14 4.2e-05 0.0034 18.1 1.0 1 23 293 315 293 315 0.98

4 14 0.09 7.3 7.6 0.2 1 23 321 344 321 344 0.93

5 14 1.5e-06 0.00012 22.6 3.0 1 23 369 391 369 391 0.98

6 14 0.012 1 10.3 0.0 1 23 404 426 404 426 0.94

7 14 8.2 6.6e+02 1.5 0.3 1 23 432 455 432 455 0.84

8 14 0.00026 0.021 15.6 3.6 1 23 489 511 489 511 0.97

9 14 0.015 1.2 10.1 0.2 2 23 517 538 516 538 0.96

10 14 9.9e-06 0.00079 20.1 0.4 1 23 546 568 546 568 0.98

11 14 0.0043 0.34 11.8 0.2 3 23 576 596 574 596 0.97

12 14 0.00014 0.011 16.5 0.3 1 23 602 624 602 625 0.95

13 14 0.069 5.6 8.0 0.3 1 23 639 661 639 661 0.96

14 14 9.3e-05 0.0075 17.0 0.0 1 20 1052 1071 1052 1074 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.1e-05	0.0025	18.5	0.7	1	23	146	168	146	168	0.95
2	14	3.8e-05	0.003	18.3	0.4	3	23	176	196	175	196	0.99
3	14	4.2e-05	0.0034	18.1	1.0	1	23	293	315	293	315	0.98
4	14	0.09	7.3	7.6	0.2	1	23	321	344	321	344	0.93
5	14	1.5e-06	0.00012	22.6	3.0	1	23	369	391	369	391	0.98
6	14	0.012	1	10.3	0.0	1	23	404	426	404	426	0.94
7	14	8.2	6.6e+02	1.5	0.3	1	23	432	455	432	455	0.84
8	14	0.00026	0.021	15.6	3.6	1	23	489	511	489	511	0.97
9	14	0.015	1.2	10.1	0.2	2	23	517	538	516	538	0.96
10	14	9.9e-06	0.00079	20.1	0.4	1	23	546	568	546	568	0.98
11	14	0.0043	0.34	11.8	0.2	3	23	576	596	574	596	0.97
12	14	0.00014	0.011	16.5	0.3	1	23	602	624	602	625	0.95
13	14	0.069	5.6	8.0	0.3	1	23	639	661	639	661	0.96
14	14	9.3e-05	0.0075	17.0	0.0	1	20	1052	1071	1052	1074	0.94

Sequence Information

Coding Sequence: ATGGAGGAAAGTTTCGGTCTGACGTGGGAGGATGCCACCACTGTGGTTCAAACAGAGGAGGTAATTTGTGGCATGGAAAATGAGATCATTCCAGCCGAAAGTGAAGAATTCACTGGCGGAGTAGTCGAGGAGGAGGTGATCCAAGAAGATGTTCAAAATGAACCAGAAATTGGTCAGCAAACTGATAATGGCAGTATTATGTATTTGACAGATGGCAATGTCTTGGTGATGCAGCAAACTAATTCAGAAAACTATCCACAAGATGATTTAATGGAATTTACAGAAGAAGTAATAACAGATCAATGGGGGGAAAGTTGCCCTGAAGAAATTATAGTTGGATCTGAAGAGGCAGTGGGCAATGTTGATGGTCAAAATGCTGAAGATTGTGATATCCCACTTCCAACAGATCAAGATGAATACACTGCCGCCAGACCATATCCATGTGATTTTTGCAGTAGGAGATTTCGCAAAAAGGCCAATCTTATGAACCATATGGTGGCGCATCAGACAGATAGGCCCCATGGTTGTAATCTGTGTGGTGTCAGATATATCCGCAAGTCTGATTTAATGAATCACTTGAAAACTCATGCATATATCCCAGATGCAGAAGTCCTGGAAGAAGAGGAGGAACTCTCTGCAAATGATAATGATTTTGATAAGgccagaaaaaaacaaaaatctttaggcaaacgaaaaagaaaaaaaagtttgaaagattttgaaatttatgaagcTAGCGGAGCAGTTGCTTCAAGTTCTAATTCATACAATTACAATGAAGACATTGGGTTAATTGAGGAAGTACCTAATAGCTCGGATTATCTCGGTACTCAGGAAGAGGAGATCCGATACCCAATAACAGATCCAAAAAAGCCATTTGTTTGCCAGCACTGCGGAGTGTGTTTTGCAAGGGAAAAAGCACTGGCGTCCCACGCCAGAATTCATGGAGGCGACAGCCCATTTGAATGTCAAAAATGTGGCGAAATGTTTTGGGACGTGAATTTAATGCGGGAACACGCGCGGTCTAAACACGGAGAAATGGAGGACTTTGATGATGATGAGGACGATGATTATTCAGATTCGGAGGGGACAAAATATGGTACATTCTATTGTGCCACTTGTGGGTTGTCATTTCATAGACAAGACAATCTTAAACGCCACCAGAGGGTACATATTAAAGAGGAGTGTGTAACTGAGCAGGATTTTGGGCACATTTGCAATGTATGCGGAGAGTCTTTTCAGGAAGCCCTTGACTTGCTGGCTCACGCGGAAGTCCACGCTCGAACATCCGAGCATCGTTGCATGGTTTGTGGTGAAATTTGTCTCGATGAAAATGTACTTGCGAATCACGtacaaattatccataaaaaattACCTCCTAATACTTGTATGCTGTGCGGTCGCACTTGCAAAGACGGTCGCATCCTTTTGAAGCACTCATGGGAACATTCGAAGGAGAAAGCATTTGCTTGCTCAAAATGCGCAAAGACCTTCCACAACAAGGCCCGATTGAAGAGGCACATGCTTTCGCACAGAAACAAGGCGGTGTCTTGCGATGTCTGCGGCGAGGATTTTCCCGACGGAAGGGGCCTGATGAATCATAGGCACAGCCACAGCAGTGTCTCGGGGCGGCAGTTCCCTTGTCGAGAGTGCGGCAAGACGTTTGGTTCTCGTAGTTCTCAACAGATCCATATCAGAATACATACAGGTGAAAGACCTTATGGTTGCCGATTTTGTTGGAAGGCATTTGCTGATGGCGGCACTCTGCGTAAACACGAAAGAATTCATACCGGCGAGAAGCCTTACGCTTGCGCAGTGTGCCCTAGGGCTTTTAATCAACGGGTGGTTCTTAGGGAACATATTAGATCACACCATTCAGGACCCGACCCAAAGTTTACCCATAGTTTGACACCTTTTTCTTGTGCCGTTTGTTCGGATATGTTCGCCACTTCGCAGGATCTTATCTTACATTTAATACATCATTGCGACATGAATACCGCTATGAAACGACAGCCACAAGTCGGACCAAGGAAGTATAAGAGAAGGCGAAAACTTAAACCTCACGAACTGGATATGATATCAAATCGACAGgaacaagaaaatttcgaaaatgacAATTTTGAGAATGAACAGTTCTCAGAGTCTGacgaagaaaaagaaagaaagaggAGAGCCACGAGACGGTCTTCGCGTAAATCGTCCAGTTCACCGAGGCCTAGCATCAGCGAAACTTGCGAAGACCTTTACAGCGGCGTCTCGCCACCACCCGAACATGTAAGCCCTTCAATGACCATTCCGAAATCGCCTACATCTAAAACTAAAGCAAAAAAGGGCAAAACCGAGTCGGGACCTTTACCCTCCAGACCCAAAATGATTCACACTCAAAAAACGAGAGTGCCCGTGGAACCTGGCGAGGATGGTAGAGTGAGACACAAGACCAGAACTCTAGTTACCAGGACACATCCTGCTGAAATTAAATCTGCCACAGGTGAACGAATTAGACCTCGAACAAAAAACGTCAGTTATCACATACTGACGCCGGAAAAGTATCCGGTGGCGACATTCTTGGAAAACGAGCCCCAACAGGCGGTCGAGAATCTTTTGAAACAAACCGAATCGGAATCGAACTTGCTGGAGGATCAGCAGCAGTCGACCACTAACGGGGACATCTTCGATGAACAAATCGTGGAACAAACTCCTGAGGTTGCCGCCGAGCAGATCGTCGAAGCGGAGCCCTTAGCGGCGACCGCCGAAGTGAAAAATAGAAGAAACAGTTTGAGGATCGCCCGCAGTAACGTTATAGGGGCGGGCAGTAGGATCCGATTGGTGAAAGGGGGCATGCTCATCTCGAAGGCAAAAAGAAATAGCGAAAGTCAGAGCGAGTCCGAGTCGATACCCACGTTACAGGCCGACGTTTATATAAAGCAAGAGTCGTCCCAGAACGTAAACAATACGAGCGATGGCGAGTTAAACAGCGAAACGTTTACGATCAAATCGGAAATCGCCTTGGGCCCAGCGGAAATGAACGAGTCCTCCCCCCAAGGCGAAACGAACACCCCAAACGTGGTTCACGTGAAGCAGGAGCTGATGGATCCCAGCGCGTTGCACGAGCTCGCCGAAATATCCATGCAGCACGCCAATTCCCATAACCTGTACAAGTGTGAAATGTGCGATGAGGTGTTTACCGATAGGGCGCAGTTGTTGGTTCACGTGCCCATACATATTTGA
Protein Sequence: MEESFGLTWEDATTVVQTEEVICGMENEIIPAESEEFTGGVVEEEVIQEDVQNEPEIGQQTDNGSIMYLTDGNVLVMQQTNSENYPQDDLMEFTEEVITDQWGESCPEEIIVGSEEAVGNVDGQNAEDCDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKSDLMNHLKTHAYIPDAEVLEEEEELSANDNDFDKARKKQKSLGKRKRKKSLKDFEIYEASGAVASSSNSYNYNEDIGLIEEVPNSSDYLGTQEEEIRYPITDPKKPFVCQHCGVCFAREKALASHARIHGGDSPFECQKCGEMFWDVNLMREHARSKHGEMEDFDDDEDDDYSDSEGTKYGTFYCATCGLSFHRQDNLKRHQRVHIKEECVTEQDFGHICNVCGESFQEALDLLAHAEVHARTSEHRCMVCGEICLDENVLANHVQIIHKKLPPNTCMLCGRTCKDGRILLKHSWEHSKEKAFACSKCAKTFHNKARLKRHMLSHRNKAVSCDVCGEDFPDGRGLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKFTHSLTPFSCAVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELDMISNRQEQENFENDNFENEQFSESDEEKERKRRATRRSSRKSSSSPRPSISETCEDLYSGVSPPPEHVSPSMTIPKSPTSKTKAKKGKTESGPLPSRPKMIHTQKTRVPVEPGEDGRVRHKTRTLVTRTHPAEIKSATGERIRPRTKNVSYHILTPEKYPVATFLENEPQQAVENLLKQTESESNLLEDQQQSTTNGDIFDEQIVEQTPEVAAEQIVEAEPLAATAEVKNRRNSLRIARSNVIGAGSRIRLVKGGMLISKAKRNSESQSESESIPTLQADVYIKQESSQNVNNTSDGELNSETFTIKSEIALGPAEMNESSPQGETNTPNVVHVKQELMDPSALHELAEISMQHANSHNLYKCEMCDEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -