Cfor006043.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000003.1:29483510-29490651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.018 1.5 9.8 2.9 2 23 170 192 169 192 0.93 2 20 0.039 3.1 8.8 3.6 1 20 325 344 325 346 0.95 3 20 4.8 3.8e+02 2.2 5.7 1 23 375 398 375 398 0.95 4 20 0.0018 0.14 13.0 0.6 1 23 431 454 431 454 0.94 5 20 1.5e-05 0.0012 19.6 1.1 2 23 540 561 540 561 0.98 6 20 0.15 12 6.9 0.0 1 20 581 599 581 603 0.72 7 20 0.0029 0.23 12.3 1.2 2 23 607 628 606 628 0.96 8 20 0.00064 0.051 14.4 0.2 2 23 662 683 661 683 0.96 9 20 0.0034 0.28 12.1 1.7 1 23 712 735 712 735 0.94 10 20 0.0077 0.62 11.0 1.4 2 23 746 767 745 767 0.97 11 20 0.0004 0.032 15.0 7.5 1 21 801 821 801 823 0.95 12 20 0.021 1.7 9.6 0.1 2 23 836 858 835 858 0.91 13 20 0.002 0.16 12.8 1.3 1 23 882 904 882 904 0.98 14 20 0.0003 0.024 15.4 1.3 2 23 922 944 921 944 0.95 15 20 4.1e-05 0.0033 18.1 0.0 1 23 963 985 963 985 0.92 16 20 3.3 2.7e+02 2.7 0.1 1 23 1032 1055 1032 1055 0.93 17 20 0.098 7.9 7.5 1.8 2 23 1066 1087 1066 1087 0.97 18 20 6.4e-05 0.0052 17.5 3.7 1 23 1115 1137 1115 1138 0.95 19 20 1.4e-05 0.0012 19.6 1.0 1 23 1146 1168 1146 1168 0.98 20 20 0.0016 0.13 13.2 0.4 1 23 1183 1206 1183 1206 0.94
Sequence Information
- Coding Sequence
- ATGGCAGAGTCGAGGCAGGACAATTTTCAGTCGTGTTGCAGGCTGTGCCTCTCCGACCGGCAAGAAACTTTTAAGTCTGTTTTCGACGCCTCTCTGAATCACAAAGACTTGCCGCAAAAGATAATGCAATTTGTATCCATCGAGaTTTTGGACAGTGATAGATTATCAATACACATATGTGACGAATGTATAACACGGCTAGAGGCATGGAATACGTATAAAAACCAGTGTCTCCAAAATCAAAGCATTCTGATAGAATGGTTAAAAAAATCTACGAACGTCAATGATATATCCGATTCAcatgTCCATATAAAAACGGAACCATCTGATGAACACGAGCCCGATATAATTAATCCTGACCTATTATTACAACCTAAACTCGAGCCTTTAGATATAAGTTCTGTGGACGAAGACTACAACGATCTGCCTCCGCCATTAACTCCTCACAACCCAGAGGAACATGATTTTTTGGAAAACGGAGAGGAAACCATTCAAGATGACGGAAAAACGTGCCTCCAGTGCAATAAATCTTTTAGCTCGGTCGCAAATAGAAAAAGACACGAGCAACACGCTCACAAAAGTGCATTTAAAAGGTCTCAGATGTGCGAAATTCGACCTGCAGTGGACGTTTCGCTAAATAATACTTCTTCAGAAAATACCAAGGCCgATCCGACATTAGACGAATCATCTCAAGACAGTCAGTCGCAAAATTCGGAAGAGTCGACAATCGAACCGTCCTCCCAAgataatcaacaaaaaattgaattcgCCGCTGGGTTAAAGCTATTCCAGAAAGATTCGGCACCGATCGAGTTCGAAGCCCTTTCCAAAATCGAATTGAGTTACTTGGAGAAATGCAAGGCAATGGTCGCAATGTATAAAACGTTGAAATGCGCTTGTCACAAAATTCAGCACGCCAGTTTGAGGGGACTTTTATCCCATTTGCGTGCATTACGGATTTGGTTCCCCTTATTTACCTGTTATCATTGCATGATTTCTTTCACCGATCGTTCGACGTTCACCAGGCATCACGTGAGATGCAGCAAAAAGCAATTGGAGACCCTAACGAAACTCTCTAATCTTAAGAAAAGGAGCGAAATCAAAACGAGATTGTATCAGAATTTCAAATGCGTTCGGTGTAAATTCATGTACAGCTTCCACGAAGACTACTGCCAGCACGTAAATGAGGACCACGGTTCTGGTGATCCTCCGTTCTACTGCTCGTGTAGAAACGCATTCGACAGTGCCGACGACTATAAGCGACACGTCTATGACTCGTGTTTGATCTCTTACTATTGCGACCTTTGTTTCGAAACGTTTACCTCACTTGACGACTTTCAAAGCCACGCCCAAGAAATGCACGACAATTCCGAGGGTTTCGTTCTTCTTCAGGACGATAACTACACCAAAAGACCCAAGCACACACCCGCTGCTTCTACTAGACACAATAATGACCAATCGCTCGTCGTTACAGGCAAAAGGGAACGTAGACAGTCCTCGAAAAATCCACCGAGTATGACTACGGCAGACTTCGAGGAAAATTGCAAAGATATCCCAACTAAACTTCTTATCAACACGATTGTTCCTCAATCGGATAAGGACCCCAAAGCTCCAGCCAAGTGCCCGATATGCCAAAAGGAATATTCCAATACTTACAATATGGTGCGCCATTACAGGACCCATATAGATAAAGACCAAGTAGTGGCCGCCAACCTCTCAGACGACGCAAACTCTTCGTATTATTCTTGCCCAGACTGTGGCGGAATGTTTGCAAACGAAGAGTGGGTACAGCATATACAGGAGAACCACGAACCTCAAACGTGCACGGAATGCGAAAAGACTTTCCAATTCCAAACGGAACTGGATCAACATCGCAGCGTTCATTTAAATTTGAAGATTAGCAGAGATTCAAAGACCCATTCTTACAAAACAACTATGCTGAGTCCCGAAGACGAAGACCAATTGCCCGGCGGGATAATGTTAATGTGTGAATTTTGCGACGCAATGTTCCCTAGTAAAGAAGACCTTAAACAACACAAGATCATGCACGATATGTCGATGGACGAGGACGACGCTCCTATGCTCGAGGTTAACGGCGAATTTGAAGATCTGAAAGACATCAAACTCGACAAATTCGAATGTCTCGAGTGCGACAGACAGTACAGTAGTGCCAAATCTCTTCGGGAGCATAACAAACACGTGCACGGATACATGAAGCAAAGCGAATATCCGAAACAGTGCGATTATTGCGAAAAAGTCTGTACCACCGGCGCGGCTCTATTTCTTCACAAGCAAATGCACGAACGTATGATGTTGGGAGATTTTAAGAAAGCTAAAGCGGCACCCGTTAAAGCGCGTAAGAAAAGTACCACCCtcgaggaggaggaggaggaatCTTATCACACCTGCAAACGTTGCTTTAAGGTGTTTTCGTCCAAGTATAATCTGAAAGCTCACATGAAATGTCACGGGATAAGTCCTCCCAAGAAAGGATCGAAGAGGCTGACTTGCGATATATGTAAAGTGACGTTTGACAACGACGACGAGCTGATCGAGCACAAAGAATTAGAACACGGTATGAATTTGGACGAGATGCCCGACTTGACGAACGAAACGGAGGAGGACACGAAGATGCCTATCGTGTACACGTGCGACGTGTGCGTCATAACTTGCAACTCGAGGGCGGCCCTTAAGAAACACAAAGAGACTCATGCTAAAGAGGGCGCCAAACCGGTCGTTCCAAAGACTAAGAATACCTCGATTTActgtaaatattgcaaaatagctTTCAACAGCACCATGGAATTAACGAGACACATGCACGTCGAACACGCGGAGTCCGCGAAGCCGAAAGAAGTGCCAGGAGgtgagaaaaatattaaacccTTTAAGTGTCCGATTTGCGGTAAGGGTTTCGCCACTTCGGGAGCAATGACGGCCCACGCGGGTTGGCACAAACGCAGCAAGGGACTCGCAGAAGGCCCCAATACACCCCAGCAGACGATggcaaacaaaataaacaaacaaataagaGTAATTCAAAAGATCGCAGATGCCGCCGCTAGTAAGCCAAAGAATAACGTCGTATCTGAATTCCGCTGTTCTACTTGTTTGGCCGAACTGCCAAACGACACAGCTTTGCAAATTCATATTCTCGAAAAGCACCGCAGCGTAAACGCCATTATGCTGATACCCCGATGCAACACGTGCAGTCAAGATTTCGAGACTCAAGAGGAATATGACACTCATAAACGTTTCCACGATTTCCTAGAGAGACAAAAGAAACACGATATGCAAAAATCGGAACTGCCACAGGCCGGCGTGGGTTCTGCTAAACCAAAGTTCCCGTGTCAATATTGCAAATCTTCGTTTAGCAGAAGTGACACTCTCAACACCCATATCAAACAGCATCATCAAGAGCACGTGGTCACAGAGTTTAAGTGCAACCAGTGTGACAGGGTATTTGATAAACAAAATTCTTTGAGCATTCATCTGAAAGTCCACGAGAAGCAGAAAGCTATCGGGGGAGGAGGGTCGAAATCTCAGTTTTCTTGTTCGATTTGCAACATGAGGTTCAACTTACCCAAAGATCTGAGGATGCACACCATCAACGCCCATCCGTTTTGA
- Protein Sequence
- MAESRQDNFQSCCRLCLSDRQETFKSVFDASLNHKDLPQKIMQFVSIEILDSDRLSIHICDECITRLEAWNTYKNQCLQNQSILIEWLKKSTNVNDISDSHVHIKTEPSDEHEPDIINPDLLLQPKLEPLDISSVDEDYNDLPPPLTPHNPEEHDFLENGEETIQDDGKTCLQCNKSFSSVANRKRHEQHAHKSAFKRSQMCEIRPAVDVSLNNTSSENTKADPTLDESSQDSQSQNSEESTIEPSSQDNQQKIEFAAGLKLFQKDSAPIEFEALSKIELSYLEKCKAMVAMYKTLKCACHKIQHASLRGLLSHLRALRIWFPLFTCYHCMISFTDRSTFTRHHVRCSKKQLETLTKLSNLKKRSEIKTRLYQNFKCVRCKFMYSFHEDYCQHVNEDHGSGDPPFYCSCRNAFDSADDYKRHVYDSCLISYYCDLCFETFTSLDDFQSHAQEMHDNSEGFVLLQDDNYTKRPKHTPAASTRHNNDQSLVVTGKRERRQSSKNPPSMTTADFEENCKDIPTKLLINTIVPQSDKDPKAPAKCPICQKEYSNTYNMVRHYRTHIDKDQVVAANLSDDANSSYYSCPDCGGMFANEEWVQHIQENHEPQTCTECEKTFQFQTELDQHRSVHLNLKISRDSKTHSYKTTMLSPEDEDQLPGGIMLMCEFCDAMFPSKEDLKQHKIMHDMSMDEDDAPMLEVNGEFEDLKDIKLDKFECLECDRQYSSAKSLREHNKHVHGYMKQSEYPKQCDYCEKVCTTGAALFLHKQMHERMMLGDFKKAKAAPVKARKKSTTLEEEEEESYHTCKRCFKVFSSKYNLKAHMKCHGISPPKKGSKRLTCDICKVTFDNDDELIEHKELEHGMNLDEMPDLTNETEEDTKMPIVYTCDVCVITCNSRAALKKHKETHAKEGAKPVVPKTKNTSIYCKYCKIAFNSTMELTRHMHVEHAESAKPKEVPGGEKNIKPFKCPICGKGFATSGAMTAHAGWHKRSKGLAEGPNTPQQTMANKINKQIRVIQKIADAAASKPKNNVVSEFRCSTCLAELPNDTALQIHILEKHRSVNAIMLIPRCNTCSQDFETQEEYDTHKRFHDFLERQKKHDMQKSELPQAGVGSAKPKFPCQYCKSSFSRSDTLNTHIKQHHQEHVVTEFKCNQCDRVFDKQNSLSIHLKVHEKQKAIGGGGSKSQFSCSICNMRFNLPKDLRMHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -