Cfor013285.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000007.1:15458202-15461750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.063 5.1 8.1 2.5 1 23 79 101 79 101 0.98 2 15 0.00066 0.053 14.3 0.5 2 23 107 128 107 128 0.98 3 15 0.0013 0.11 13.4 6.3 1 21 134 154 134 156 0.94 4 15 0.00012 0.0099 16.6 0.3 1 23 162 184 162 184 0.98 5 15 0.0013 0.1 13.5 1.3 1 23 191 214 191 214 0.92 6 15 0.0079 0.63 11.0 0.9 2 23 222 244 221 244 0.93 7 15 9.3e-05 0.0075 17.0 0.3 1 23 249 272 249 272 0.97 8 15 0.0018 0.15 12.9 1.2 2 23 276 298 275 298 0.94 9 15 5.2e-05 0.0042 17.8 1.3 2 23 305 327 304 327 0.96 10 15 1.1e-05 0.00089 19.9 1.6 1 23 334 356 334 356 0.98 11 15 4.8e-06 0.00038 21.1 1.3 1 23 360 382 360 382 0.96 12 15 8.8e-07 7.1e-05 23.4 1.1 1 23 388 410 388 410 0.98 13 15 9.1e-05 0.0074 17.0 3.5 1 23 416 438 416 438 0.98 14 15 0.00026 0.021 15.6 3.5 1 23 444 466 444 466 0.98 15 15 4e-06 0.00032 21.3 1.4 1 21 472 492 472 496 0.90
Sequence Information
- Coding Sequence
- ATGGTAGAATACAATTTTGGTGAATTGCCTTTGGAAACCGGAAATACCAATTCCTTTCATACAGAACAGCCTACCAAGGATGATCCTAATAATCACTTGTTTATTGAAGGAGATgaaataaattatgaaaacgAAGATTACGCAGTAACCAACAAAGATTTGGAAGAAGCCTTTGCACAAGAGTTCGAATTGGAAGAGGGTAAAAGGGGTCTGTTTTTGAATGAGACAACCCTCTTTCGTTGTCAGATGTGCAGTGATGTTTTCAAAAAGTATCCAGATTTCCGAGAGCATCGCAAACAGCATTTTATACACAAACGGACGTGTAAGATTTGTAACATTACTTTTCAAGGTCTTACAAAACTAAATGACCACATGAATATTCACAATGGGGTGAGGCCTCATAAGTGTGACCAATGCGACAAAGACTTCATATCCAAAGATCATCTTAAATTGCATGTCAAATGTCACGTAATAGATCGAAAGTTTAAGTGTGATGTATGTGGCAACCAATACAAAACTGCCAGAAGTTTAAGAGGGCATATGGATATTCATATTAGAAAAGTCAAAGAATTTGTTTGCAAGATTTGTAAAAAAGATTTCGATTCTGTTTCTAAATTACATGAACACCTCACTGATGAGCATGGTGAAAAGTTACCTGAAGTTCAGTGTGGTGTATGTGGAAAGAATTTTAAATCTGATCGATCACTCGAATGTCATTTATCTATGGCACACAAAGAACTAAAATTTCCATGTGACATATGTGGGAAGATTTTTCCTTCAATGTACAGAATAAAGAGGCATGTACGCAGATCTCACACAGCTGTAGAGTGTGAAATTTGTAAGAAAGTGTTCCATGAAAGAGGAGCTTACACAAAACATAAGAAGTTAGATCATTTTGAAGAGAAACCGACGAAATGCGACATATGTAACAAAACCTATGATAAATTAAAGAACTTAAAGGAGCACGTAAGGTTGCAGCACACTCAGGACGGGCAAAAACACGAGTGTAACATTTGTAACAAACTATTCATTAACAAGCCATTATTAAATAACCATTTGAAAACCCATTCCAAGTTGTTTAAATGTAGCTTTTGCGACCGGGTGTTTTCTTCAAGGTACAATTTGGAAATTCATAGCGTTACTCATACTAAAGAGCGCAAGTACCAGTGCCCGCAGTGCGGGAAGATGTATGCCACGAAAACGACACTAAAAAATCACGTATTCACCCATTCAGACAATAGGCCTTTTCAGTGTGAGCAGTGCAACAagagttttaaaagcaataggCGGCTTTATGTGCATAAAAACTCGCATTTGACCGAATATAAGTTTCAGTGTTTCACTTGTTCcgcgaaatttaaaacaaaagagTACCTAAAGGCTCACCAGTACAGGCACAGCAAAGagAAACCGTTCATTTGTCCCCAATGCCCTAAAAGCTTTAAGCACAAAAAAACATTGGAGAAACATTTGGTTATCGGTAAACACAAGTATTCGAACTGCGATTCAGAGGATCCAAATGATTGTGACGCATTTACAAAAGATTGCAATTACAGTGATGAATGCCAAGAAGTTTCAATTAAGCAGGAACCGGAAGAAAAATACGAAGCGCCAAGTTATGAAGCCGTATTCCTGGCAAATATTAAAAGTGAGGTTGAAGCTCAACCCTGCAAGGaggttaaaatagaaaattgcgACGAAGTGGATGATTAA
- Protein Sequence
- MVEYNFGELPLETGNTNSFHTEQPTKDDPNNHLFIEGDEINYENEDYAVTNKDLEEAFAQEFELEEGKRGLFLNETTLFRCQMCSDVFKKYPDFREHRKQHFIHKRTCKICNITFQGLTKLNDHMNIHNGVRPHKCDQCDKDFISKDHLKLHVKCHVIDRKFKCDVCGNQYKTARSLRGHMDIHIRKVKEFVCKICKKDFDSVSKLHEHLTDEHGEKLPEVQCGVCGKNFKSDRSLECHLSMAHKELKFPCDICGKIFPSMYRIKRHVRRSHTAVECEICKKVFHERGAYTKHKKLDHFEEKPTKCDICNKTYDKLKNLKEHVRLQHTQDGQKHECNICNKLFINKPLLNNHLKTHSKLFKCSFCDRVFSSRYNLEIHSVTHTKERKYQCPQCGKMYATKTTLKNHVFTHSDNRPFQCEQCNKSFKSNRRLYVHKNSHLTEYKFQCFTCSAKFKTKEYLKAHQYRHSKEKPFICPQCPKSFKHKKTLEKHLVIGKHKYSNCDSEDPNDCDAFTKDCNYSDECQEVSIKQEPEEKYEAPSYEAVFLANIKSEVEAQPCKEVKIENCDEVDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -