Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000006.1:35050537-35052720[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.7e-05 0.0013 19.4 1.4 2 23 38 59 37 59 0.97

2 19 1.8e-05 0.0015 19.2 2.3 1 23 65 88 65 88 0.97

3 19 0.0012 0.1 13.5 1.8 1 23 95 117 95 117 0.98

4 19 0.0018 0.14 13.0 0.2 2 23 124 146 124 146 0.94

5 19 0.0001 0.0081 16.9 1.1 1 23 151 173 151 173 0.96

6 19 0.0071 0.57 11.1 2.9 2 23 184 206 183 206 0.93

7 19 1.9e-05 0.0016 19.2 3.9 1 23 213 235 213 235 0.97

8 19 1.4e-06 0.00011 22.8 0.9 2 23 242 263 241 263 0.97

9 19 1e-07 8.2e-06 26.3 3.0 1 23 269 291 269 291 0.98

10 19 0.0038 0.31 12.0 0.1 1 23 297 320 297 320 0.97

11 19 0.2 16 6.6 0.6 1 23 351 373 351 373 0.95

12 19 0.01 0.81 10.6 3.0 1 23 377 399 377 399 0.98

13 19 8.5 6.9e+02 1.4 1.3 1 23 406 428 406 428 0.90

14 19 0.00019 0.016 16.0 1.4 1 23 434 457 434 457 0.96

15 19 1.7e-05 0.0014 19.3 1.2 1 23 467 490 467 490 0.97

16 19 0.001 0.081 13.8 1.2 3 23 498 518 497 518 0.98

17 19 0.00012 0.0097 16.7 3.2 1 23 524 546 524 546 0.96

18 19 3.9e-06 0.00031 21.4 1.0 1 23 552 574 552 574 0.98

19 19 0.24 19 6.3 1.2 1 22 580 601 580 601 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.7e-05	0.0013	19.4	1.4	2	23	38	59	37	59	0.97
2	19	1.8e-05	0.0015	19.2	2.3	1	23	65	88	65	88	0.97
3	19	0.0012	0.1	13.5	1.8	1	23	95	117	95	117	0.98
4	19	0.0018	0.14	13.0	0.2	2	23	124	146	124	146	0.94
5	19	0.0001	0.0081	16.9	1.1	1	23	151	173	151	173	0.96
6	19	0.0071	0.57	11.1	2.9	2	23	184	206	183	206	0.93
7	19	1.9e-05	0.0016	19.2	3.9	1	23	213	235	213	235	0.97
8	19	1.4e-06	0.00011	22.8	0.9	2	23	242	263	241	263	0.97
9	19	1e-07	8.2e-06	26.3	3.0	1	23	269	291	269	291	0.98
10	19	0.0038	0.31	12.0	0.1	1	23	297	320	297	320	0.97
11	19	0.2	16	6.6	0.6	1	23	351	373	351	373	0.95
12	19	0.01	0.81	10.6	3.0	1	23	377	399	377	399	0.98
13	19	8.5	6.9e+02	1.4	1.3	1	23	406	428	406	428	0.90
14	19	0.00019	0.016	16.0	1.4	1	23	434	457	434	457	0.96
15	19	1.7e-05	0.0014	19.3	1.2	1	23	467	490	467	490	0.97
16	19	0.001	0.081	13.8	1.2	3	23	498	518	497	518	0.98
17	19	0.00012	0.0097	16.7	3.2	1	23	524	546	524	546	0.96
18	19	3.9e-06	0.00031	21.4	1.0	1	23	552	574	552	574	0.98
19	19	0.24	19	6.3	1.2	1	22	580	601	580	601	0.94

Sequence Information

Coding Sequence: ATGTACGTCAGCGTGTCACCAAATCGTTTTGATTACGTAACAATTTTTAGGTTCCAGTCCGCGTCGTACCTCGTCAAGGCGGAGCTGATGTTGAAACCTGGCAAAATCAAAACCTGTCCCAACTGCGGAAAGCCGTTCAAAGACACGCGGCGATTAAAAAAGCACCTCCTTTCGCACAGTGACTTGCGACCGTACTCTTGCGACTTGTGTCAGAAACGATTCAAGCGGAAATATGACGTCAAAACGCACGCGAGACGGGTCCATGGCAGTAATCCCGCCTCTTTCGAGTGCGATTTCTGCTCCAAGAGGTTACGATCGAAAGGTTCGTGGACGGTCCACCGCAAACGTCACCTCAAAGAGTACGTCGCCAAGTGCGAAACGTGTGGGGTCGGTTTCGTTACCAACCAAGAGTACAACAACCACATAGGATCGAAACACGGCACCAGCAATCACATTTGCAGCGTGTGCGGCAGAAGTTGCTACGACAAGGCCGCCCTCCAAGGTCATATGGCCCGTCACGCCGACGACTACGGCAAAAACGACAATATTCGCTGCGACATCTGCAACAAGACGTTCCTGCAGGAGAAGTACCTCAAGCACCATTTCCTGCGCATGCACCAAAACGGCGGTCAGAGGTTCATCTGTCACCACTGCGGCAAGAAGGTCAATTCGAAACGATCACTTAGAGATCACATGTTGATCCACGAGGGCTTGAAGCCGCTGGAGTGCAAGGAGTGCGGCAAGAGTTTTGGGTTGAGAACCACACTCAAGCTTCACATGAGGACTCACACGGGTCATAGACCCTACGAGTGCAAGATATGCGGAAAATGTTTCACGCAGAAGACCCCGCTCACGGTGCACATGAGATACCACACGGGCGAGAGGCCTTACACTTGTGGAGTATGCGATTCAGGGTTCGTCAGTAAGGGGGCGCTGGGGTTGCACCAGAAAAACAAACACGCCATGATGAGGACACCCGGGAACGATTTGCCGAAACATCCGACAAACATGGCGGATAAGGCGACGAAAGAAAACGACCACAAGATCAGGTTCGCCTGCGAACTGTGCGAGCACGTGTCCAAGACGAGCGTGGACTTTGCGCTGCACTCGAAAGAGCACTCGGACAAGTACTACTGTCAGTACTGTTCTTACAAAACCTCGAAAGATAAGAACATGGTCAAACACATGAAGGGCCACGGCAGTTCGAGGTCGTTTCACCATTGCCAGGTCTGCTACAACGTGTTTCCGGAAGCCGTCCAGGCGGAAGAGCACAAGAACTTCCACTCGGGAGAGATGCCCTACAGCTGCGAGATGTGCGGCAAACATTTCATGTTCTCGTGGCTGTTGAGCACCCACATTAAACTGCTGCACTATGGGGTGAAAAAAGAAGACGACTTGTTCACCTGCCCGTTATGTAGGCTGACTTTCGGTACCAAGTCGGGGCTGAGGAAGCATCAGATCCGAAAACACGAACCCAAAGTGCCCACCCTCTGCGACATCTGCGGCAAGAGCTTGTCAAGCAACGAGACTCTGAAGTTCCACAAGAGGACCCACACGGGGTACAAGCCTCACATTTGCAGCACTTGCGGAAAGAGGTTTTGCAAGAAAGGTTTGCTGGTGGAACACGAAAGGGTTCATACGGGAGAAAAGCCGTTCATTTGCCACTACTGCGAGAAGGGCTTCTCTCAAAGGGGACCACTGAAGATCCACTTGAGGATCCATACGGGGGAGAGGCCTTTCGTTTGCAGACTCTGCGGCAAGGGTTGTATCTGCAAGAGTGTGCTCGACGCCCACATGCGTTCCTGTTCGGGGGGAATAGTCTAG
Protein Sequence: MYVSVSPNRFDYVTIFRFQSASYLVKAELMLKPGKIKTCPNCGKPFKDTRRLKKHLLSHSDLRPYSCDLCQKRFKRKYDVKTHARRVHGSNPASFECDFCSKRLRSKGSWTVHRKRHLKEYVAKCETCGVGFVTNQEYNNHIGSKHGTSNHICSVCGRSCYDKAALQGHMARHADDYGKNDNIRCDICNKTFLQEKYLKHHFLRMHQNGGQRFICHHCGKKVNSKRSLRDHMLIHEGLKPLECKECGKSFGLRTTLKLHMRTHTGHRPYECKICGKCFTQKTPLTVHMRYHTGERPYTCGVCDSGFVSKGALGLHQKNKHAMMRTPGNDLPKHPTNMADKATKENDHKIRFACELCEHVSKTSVDFALHSKEHSDKYYCQYCSYKTSKDKNMVKHMKGHGSSRSFHHCQVCYNVFPEAVQAEEHKNFHSGEMPYSCEMCGKHFMFSWLLSTHIKLLHYGVKKEDDLFTCPLCRLTFGTKSGLRKHQIRKHEPKVPTLCDICGKSLSSNETLKFHKRTHTGYKPHICSTCGKRFCKKGLLVEHERVHTGEKPFICHYCEKGFSQRGPLKIHLRIHTGERPFVCRLCGKGCICKSVLDAHMRSCSGGIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -