Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000004.1:10788719-10792613[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.7e-05 0.0022 18.7 2.8 1 23 241 263 241 264 0.95

2 12 3.8e-05 0.003 18.3 2.4 1 23 264 286 264 286 0.97

3 12 1.7e-06 0.00013 22.5 1.9 3 23 294 314 292 314 0.96

4 12 1.2e-05 0.00097 19.8 0.6 1 23 320 342 320 342 0.97

5 12 1.7e-05 0.0014 19.3 0.4 1 23 348 370 348 370 0.97

6 12 7.8e-05 0.0063 17.3 1.8 2 23 377 398 376 398 0.97

7 12 7.8e-08 6.3e-06 26.7 0.2 1 23 404 426 404 426 0.98

8 12 6.5e-07 5.3e-05 23.8 0.4 1 23 432 454 432 454 0.98

9 12 9.6e-07 7.7e-05 23.3 2.8 1 23 460 482 460 482 0.99

10 12 1.5e-05 0.0012 19.5 3.4 1 23 488 510 488 510 0.99

11 12 2.9e-06 0.00023 21.8 1.8 1 23 516 538 516 538 0.98

12 12 1.9e-06 0.00015 22.4 1.0 1 23 544 566 544 566 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.7e-05	0.0022	18.7	2.8	1	23	241	263	241	264	0.95
2	12	3.8e-05	0.003	18.3	2.4	1	23	264	286	264	286	0.97
3	12	1.7e-06	0.00013	22.5	1.9	3	23	294	314	292	314	0.96
4	12	1.2e-05	0.00097	19.8	0.6	1	23	320	342	320	342	0.97
5	12	1.7e-05	0.0014	19.3	0.4	1	23	348	370	348	370	0.97
6	12	7.8e-05	0.0063	17.3	1.8	2	23	377	398	376	398	0.97
7	12	7.8e-08	6.3e-06	26.7	0.2	1	23	404	426	404	426	0.98
8	12	6.5e-07	5.3e-05	23.8	0.4	1	23	432	454	432	454	0.98
9	12	9.6e-07	7.7e-05	23.3	2.8	1	23	460	482	460	482	0.99
10	12	1.5e-05	0.0012	19.5	3.4	1	23	488	510	488	510	0.99
11	12	2.9e-06	0.00023	21.8	1.8	1	23	516	538	516	538	0.98
12	12	1.9e-06	0.00015	22.4	1.0	1	23	544	566	544	566	0.99

Sequence Information

Coding Sequence: ATGTCCTATCGAGCGATAAATTTAGAAAAGATTTGTAGAACGTGCCTGTCAGAAGACAGTCAAATGCGCTCCGTGTACAGCATTCAAGAGACTTTGGGCCAAGAACTTAGGCTGGTGGAAATGTTAACAGCCTGTGCTTCCATACAAATTTTAGAGAACGATGGTTTACCGCATCAAATTTGTAACCGATGCACTCAGGATATTACTAAAGCTTATTCCTTCAGACAGCTTTGTGAGAGGTCAGATTCTACCCTTCGAAATttgtttatagaaaaaacacCAACGATTGAAAACTTCATAGAATTGAAACCTTTAGTTACTGCATTAACAAATTCGACCGAAAATAGTCAAAACTCAGAAACTGAAGGCTTACCTGAAATTCAATCAGACACAATTACCGAATTTGTAGCAGAACAAAGTCGCGAATCATTTGATGGTCATATTTTGCCTGCCGACTTGGAATCTAAACTAGATAACATAATCCCTAGTGACTTGGGCAGCAAATTAGACATTTATGATACCAAATATAAATTTGGAAGTGTCACTTTTCTAGATGAAAATTTAGTTCTTAATAGTGGTCTAAGTGGTGGTCATAACCTGGAAGAATTGGATCAGTTCAATTCATCTGTAAATGGTTTTGAAGGGCCAGATCCGAGTCTTAAAAAGGAATTTAAAAtagagaatttaaataaaaaagaagatgaAACATCCCAGCCATTGTTTCCTTGTAGCAACTGTACAAAATGTTTTACAACAGAAGCAGATTTAAAGattcaTTCCAAATCACACCATGTGTGCCCGAAATGTTATCAAGATTTTGCAAGTGCAAGCACCCTCTGCCGTCACCTCAAGAAACACGACCAACAACGCGGCCATCTATGCAGTGAATGCGGTAAAGGATTTTTCCGATCTGACGATCTAAAGCGACACCTTCTGACGCACACCGGCGAGAGGCcgtttgtttgtaaaatatgcGATAAATCATTTGCGCAATCGTTCCGTTTATTGGAGCACACGAGGGCCCACGAAAACGCCAAAGGGTTTATATGTTCTACATGTGGAAAAGGGTTCTCGAGGTACACTAGTTTAGCGGCTCACAACAAAATCCACAGCGGGGTGAAAAATCAGGAGTGCACTGTCTGTGGCAAAAAATTGTGCGGATCGAGTTCATTGTTGATGCACATGAAAACGCACACGGGTCTTAAAGATTACATTTGCGTATATTGCGGGAAGGGATTTACCTCGCCCAGTAATCTGACGATACACAAGAGGATACATACGGGCGAGAAACCTTACGTGTGTAAAGATTGCGGCAAAGGTTTCCCGGATCAATCCAGGCTTAAGGTACATTCCAGGTCTCATAGCGGAGAAAGACCTTACGTCTGTAGTTACTGTAAAAAGGGGTGCGTCAGCTCGTCGCAGCTCAAGAAGCACATTAGAATCCATACGGGAGAGAAGCCGTACCAGTGCCACATGTGTACGAAATCTTTTATGGCCAAGGAGTATTTGAAGATCCACATCAAAACCCACACGGgcgAAAGAAATCACGTATGCACGTACTGTTCCAAAGGATTTTATCAAGAATCAACTCTCAAAGTTCACATAAGGATCCATACAGGCGAACGGCCCTACAAGTGCAATATTTGTGATAAAACGTTCATGCAAACTGGTCCACTTTCCACTCACATGAAGACGCATTTGAAGGTGGAATAA
Protein Sequence: MSYRAINLEKICRTCLSEDSQMRSVYSIQETLGQELRLVEMLTACASIQILENDGLPHQICNRCTQDITKAYSFRQLCERSDSTLRNLFIEKTPTIENFIELKPLVTALTNSTENSQNSETEGLPEIQSDTITEFVAEQSRESFDGHILPADLESKLDNIIPSDLGSKLDIYDTKYKFGSVTFLDENLVLNSGLSGGHNLEELDQFNSSVNGFEGPDPSLKKEFKIENLNKKEDETSQPLFPCSNCTKCFTTEADLKIHSKSHHVCPKCYQDFASASTLCRHLKKHDQQRGHLCSECGKGFFRSDDLKRHLLTHTGERPFVCKICDKSFAQSFRLLEHTRAHENAKGFICSTCGKGFSRYTSLAAHNKIHSGVKNQECTVCGKKLCGSSSLLMHMKTHTGLKDYICVYCGKGFTSPSNLTIHKRIHTGEKPYVCKDCGKGFPDQSRLKVHSRSHSGERPYVCSYCKKGCVSSSQLKKHIRIHTGEKPYQCHMCTKSFMAKEYLKIHIKTHTGERNHVCTYCSKGFYQESTLKVHIRIHTGERPYKCNICDKTFMQTGPLSTHMKTHLKVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -