Cfor001491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cylas formicarius
Gene Symbol
-
Assembly
GCA_029955315.1
Location
JARGXY010000001.1:33928480-33934329[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.1e-06 8.7e-05 23.1 0.4 1 23 247 270 247 270 0.95
2 13 3.6e-05 0.0029 18.3 0.4 1 23 306 329 306 329 0.97
3 13 1.6e-06 0.00013 22.6 0.3 1 23 335 357 335 357 0.98
4 13 8.5e-06 0.00069 20.3 0.4 2 20 363 381 362 383 0.95
5 13 2.2e-08 1.8e-06 28.4 0.7 1 23 394 416 394 416 0.98
6 13 4.5e-05 0.0036 18.0 2.9 1 23 426 448 426 448 0.98
7 13 4.4e-06 0.00035 21.2 0.5 1 23 454 476 454 476 0.98
8 13 2.3e-06 0.00019 22.1 0.9 1 23 482 504 482 504 0.98
9 13 3.3e-06 0.00026 21.6 3.5 1 23 510 532 510 532 0.96
10 13 0.0001 0.008 16.9 4.1 1 23 538 561 538 561 0.96
11 13 0.0017 0.14 13.0 0.5 2 23 568 591 567 591 0.94
12 13 7.9e-06 0.00064 20.4 0.6 1 23 597 619 597 619 0.97
13 13 7.2e-06 0.00058 20.5 0.9 2 23 626 648 625 648 0.95

Sequence Information

Coding Sequence
aTGGATATAACAGTGGTAAAGCAAGAAGACTGTGAGGAAGCTGTTAAAGTTGAAGAAAGAAATGATCACGACACCCAACAGGAAGAAGAAATTTCAACTCCCATGTTAGAAGATATTAGTCACATAAGAGTAGCAGGACAACATTATCCTTTGATACTAAATGCATATGGACAAAATTCTAATGGCAATTTACAGATAACTGAAGCTGAGGATGGTACAACTTACACTTATGTTATAGAGAATGAATATGTTAATGATATTGAGTATCATTTAGCAGAGGGAGAACATTACATTATTGAAGAATACCATGGTGATTATGAGGATCCACAAGATAGTCAGTATGAGACCTTGTATGTGGAAGAAACTATTGAAGAATCTGCTTATGATGAAGAATTTAGGGAAAGGGAATATTCTGGAGAGAGTTCCACAATATCCGAGGAAATAATTAATGATCCTGAAGAAATGATTGAAAATGAAGAAACAGTTACTGTTAATGAAAATGAAGATGGACACCAAGAGTTAAATACATCTTTGGGACAAGAAGGAATTGAGGAAAGGAGCGGTCTTGGTCATATATCAGTtgtaaaacaagaaaaaaatcatgtaGAGCTTGCCAAACAATCCATTAAAGTTGAACTTAATGATAATGAAGATCCTGACGAGAAAGGAGATGATGCTGCattattagaaaatttgaaaaataaaagtgaaattGAGGACAATGATGGGAAAAACTGTTTTGAGTGCAGTATTTGTGGAAGAAGCTTCAAGTCGCCAACAAATGTAAAACGGCACCTTAGCTTGgtgcatttaaaatttgtggACAATGAATCTAAAGAGAACACTGATGTCCTGACATTTAAGCTTTGTTCATGCTGTGGAGAGCCTACTGATACAGCTCATACGATGGGCGATTTTAAATGTGAGCAGTGTGATAAACTTTTTGTTCAGCAAAATTCATTGGACAGACATATCAGTATTGATCACCCGAAGGATGATATCTACGTATGTGTTGAATGCAAAAAAACCTTTAATACTCGCGAATCGTTAGTTGATCATATTCGTGTACATCCAATTAAATCTGTTAAATGCAATGGTTGCGGTAGAGAGTTCACTAGAAAATACCACCTCGATAGACATATTGGTCAGACAGGTTGCACTGGTGTTCCAAAATCAGTTTATGACTGTAGGGTTTGTGGCAAATCATTTACACGTAAAGATAACCTTGCTGACCATCTACGGACCCACATTGGTATTCTAAGacccaaaaaaatgttttgttgtgAATACTGTGACAAAGAATTCACAGGACATGCCTTATTAAACATCCATGTTAGGACTCATACTGgaGAAAAACCGTATCCATGTGATATATGCTCAAAGAAATTTCCTTCCAGCGGTGCAATGAAAAAACATCGCAGAATGCATACAGGCGAAAAACCTTATATTTGTTCAAagTGTGATAAACGTTTCGCAGCAAAGGAGACACTAAATCGCCATTGGCGCACACATACAGGAGAGAAACCTCATCAGTGCAATTTTTGCGGGAAgTCATTTATTCAAGCATCGCAACTTCGGGCCCATATTTTTCATCACACTGGTGAGAATGCATATACTTGCAAACACTGTGGCCGAGCTTTTAATCGAAAGCTTCGTCTAACAACTCACATAAAATTCATGCATGAGGGAGCTGCGCCTTTGACTTGTCCCCATTCTGGTTGCGACAAAACATTTTTCCGTAAAGAAGACATTGCGCGACATGTTGTAATTCATAGTGGAGAAAAAGctttcgAATgtgatatttgcaaaaaacgcTTTGCGGTGAAATCATCTTTAAAGATTCATAAACTTATACATCGCAAAGAGCCGCCTGTTAGCTGTGAAACTTGTGGTAGAGCCTTTATAAGACAGGACTGCCTCATGAGACATATAAGAGCCAGACATCGGGATGTTTTAGAAGATATAATGTCAAATGCAGAGAAAAAACGGTTACAAAAACGATTGTTGGAAGCAGCCAGCAGTAAAGGAGCCAAACTTGATTTGAGCAATAACATAATATGGAATGAGTTAACATTGACTGAATTAGTTAAGGAACTTTTAACTCTCCTAGTAGATGAAGAGTGTTTGGTAGAATTTGGTCATCCAGATGCTCCTGTAGACCGAGTTTTAGACTCTGTTATCAGAAGATGTGGGCATGAGCCTGCCTCCCAGGAGAAATACGATTACATAGGAAGAATGAGAGAAAATGCTAAGTTATTATTTACGGTTGTTATTGATGATCAAGCAGTGAAAGAATTACTAAACAACCAAACAGTAGACGAGGTAATACTCCATGTACTAAGATTAGCTAAGAAACAAGACAGTGATAAAGATGCACATATAAGCGAAAATGAAATGGACATGGGAATTAAAGAAACTCATAATATTGACTCGTAA
Protein Sequence
MDITVVKQEDCEEAVKVEERNDHDTQQEEEISTPMLEDISHIRVAGQHYPLILNAYGQNSNGNLQITEAEDGTTYTYVIENEYVNDIEYHLAEGEHYIIEEYHGDYEDPQDSQYETLYVEETIEESAYDEEFREREYSGESSTISEEIINDPEEMIENEETVTVNENEDGHQELNTSLGQEGIEERSGLGHISVVKQEKNHVELAKQSIKVELNDNEDPDEKGDDAALLENLKNKSEIEDNDGKNCFECSICGRSFKSPTNVKRHLSLVHLKFVDNESKENTDVLTFKLCSCCGEPTDTAHTMGDFKCEQCDKLFVQQNSLDRHISIDHPKDDIYVCVECKKTFNTRESLVDHIRVHPIKSVKCNGCGREFTRKYHLDRHIGQTGCTGVPKSVYDCRVCGKSFTRKDNLADHLRTHIGILRPKKMFCCEYCDKEFTGHALLNIHVRTHTGEKPYPCDICSKKFPSSGAMKKHRRMHTGEKPYICSKCDKRFAAKETLNRHWRTHTGEKPHQCNFCGKSFIQASQLRAHIFHHTGENAYTCKHCGRAFNRKLRLTTHIKFMHEGAAPLTCPHSGCDKTFFRKEDIARHVVIHSGEKAFECDICKKRFAVKSSLKIHKLIHRKEPPVSCETCGRAFIRQDCLMRHIRARHRDVLEDIMSNAEKKRLQKRLLEAASSKGAKLDLSNNIIWNELTLTELVKELLTLLVDEECLVEFGHPDAPVDRVLDSVIRRCGHEPASQEKYDYIGRMRENAKLLFTVVIDDQAVKELLNNQTVDEVILHVLRLAKKQDSDKDAHISENEMDMGIKETHNIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-