Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000006.1:35028656-35036440[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 1.2e-06 0.0001 22.9 0.5 1 23 155 177 155 177 0.96

2 24 2.3 1.9e+02 3.2 2.3 3 19 239 255 237 259 0.93

3 24 0.0041 0.33 11.8 5.3 1 23 265 288 265 288 0.92

4 24 0.00014 0.011 16.5 3.1 1 23 298 320 298 320 0.98

5 24 0.0006 0.048 14.5 0.9 3 23 327 347 325 347 0.97

6 24 0.00027 0.022 15.5 0.5 1 23 353 375 353 375 0.97

7 24 9.9e-08 8e-06 26.4 0.7 1 23 381 403 381 403 0.98

8 24 0.0058 0.47 11.4 0.1 1 21 409 429 409 430 0.95

9 24 0.15 12 7.0 0.4 1 23 507 529 507 529 0.92

10 24 0.61 49 5.0 0.3 1 13 533 545 533 557 0.74

11 24 0.94 75 4.4 1.8 1 23 563 585 563 585 0.92

12 24 0.0001 0.0083 16.9 1.1 1 23 591 614 591 614 0.93

13 24 4.5e-06 0.00036 21.2 0.7 1 23 625 648 625 648 0.98

14 24 9.8e-07 7.9e-05 23.3 0.2 2 23 657 678 656 678 0.98

15 24 0.00038 0.03 15.1 1.6 1 23 684 706 684 706 0.97

16 24 0.0067 0.54 11.2 0.6 3 23 759 778 758 778 0.96

17 24 0.0012 0.099 13.5 0.3 1 23 781 803 781 803 0.97

18 24 0.0068 0.55 11.2 0.3 1 23 808 830 808 830 0.94

19 24 0.57 46 5.1 0.1 1 23 834 858 834 858 0.74

20 24 0.013 1 10.3 0.3 2 23 865 886 864 886 0.97

21 24 0.26 21 6.2 5.9 1 23 892 915 892 915 0.93

22 24 1.1e-05 0.00087 20.0 0.6 1 23 926 949 926 949 0.94

23 24 2.8e-06 0.00023 21.8 0.5 2 23 958 979 957 979 0.98

24 24 5.3e-07 4.3e-05 24.1 0.5 3 23 987 1007 985 1007 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	1.2e-06	0.0001	22.9	0.5	1	23	155	177	155	177	0.96
2	24	2.3	1.9e+02	3.2	2.3	3	19	239	255	237	259	0.93
3	24	0.0041	0.33	11.8	5.3	1	23	265	288	265	288	0.92
4	24	0.00014	0.011	16.5	3.1	1	23	298	320	298	320	0.98
5	24	0.0006	0.048	14.5	0.9	3	23	327	347	325	347	0.97
6	24	0.00027	0.022	15.5	0.5	1	23	353	375	353	375	0.97
7	24	9.9e-08	8e-06	26.4	0.7	1	23	381	403	381	403	0.98
8	24	0.0058	0.47	11.4	0.1	1	21	409	429	409	430	0.95
9	24	0.15	12	7.0	0.4	1	23	507	529	507	529	0.92
10	24	0.61	49	5.0	0.3	1	13	533	545	533	557	0.74
11	24	0.94	75	4.4	1.8	1	23	563	585	563	585	0.92
12	24	0.0001	0.0083	16.9	1.1	1	23	591	614	591	614	0.93
13	24	4.5e-06	0.00036	21.2	0.7	1	23	625	648	625	648	0.98
14	24	9.8e-07	7.9e-05	23.3	0.2	2	23	657	678	656	678	0.98
15	24	0.00038	0.03	15.1	1.6	1	23	684	706	684	706	0.97
16	24	0.0067	0.54	11.2	0.6	3	23	759	778	758	778	0.96
17	24	0.0012	0.099	13.5	0.3	1	23	781	803	781	803	0.97
18	24	0.0068	0.55	11.2	0.3	1	23	808	830	808	830	0.94
19	24	0.57	46	5.1	0.1	1	23	834	858	834	858	0.74
20	24	0.013	1	10.3	0.3	2	23	865	886	864	886	0.97
21	24	0.26	21	6.2	5.9	1	23	892	915	892	915	0.93
22	24	1.1e-05	0.00087	20.0	0.6	1	23	926	949	926	949	0.94
23	24	2.8e-06	0.00023	21.8	0.5	2	23	958	979	957	979	0.98
24	24	5.3e-07	4.3e-05	24.1	0.5	3	23	987	1007	985	1007	0.98

Sequence Information

Coding Sequence: ATGGAGACCAAACAGGCTGTTCCCGTTACCTATTTCACGCCGATCGTGACGATCGACGAAATCAAAGACAACCCCCCGACCGTTACCAAAGAGACCGTACCAAAGGTGGAGATCAAAGACGAGATCGAAGAAACGCCCCCCGAAACCAAACGAAAACGGGGTCGGCCGAGGAAAATCGAACCCGACCCTCcgcagaagaagaagaaacgcAACAAGAGAAAGTCGACGAAACCGAAGAAAAAACCTCAGACCGTCGAGACGGACGACGACGTCACCGTCGAAATTAAAGTGGAGCCGAAAGACGAAGACGAACTGATCGAGACTCCCGTCACCTCCGCCAAACTGTACAAGTGTCCCGCGTGCAAAGACGATCGCGACCGCACCGAGAAAGAATTAAAAGAGCACTACAAGACCGAGCACCCCGGCAAACGTTTGCGCGCCTCCAGGTTCTCGCAGGACCTCCACGCTTGCGACGTGTGCGGCAAGAGTTTCAAGGCGGCGTCCAGCCTCAAGGACCACATGGAGACCCATAACAATTACTACTACTGTGAATCGTGCAACCACTCGACGAAGAAGATCCTCGACCACGTGGTACACTTGAGGATGCACTCACTTGTCGGGTTGTTCCAGTGTTTGATGTGCGAGTTCAGCACGGTCGAGATTAACGAGATCAACGATCACGTGACCAATCACGAGGAGATCCTCAAGTATTGGTGCGACTCGTGCAAAAAATCGTTCCAGATACTTAGCCACTTCCAGGAGCACGACAACTTCCACACGGGTCTGAAACCGTTCGATTGCGAGTATTGCGGCAAGTGTTTCATGTACTCGCGGTACCTCCACGCGCACAAAACCAACCTCCACAAGGAGGACATGAACTGCCCGAGTAATTACGAGTGCGTCATCTGTAACAAGAGATACCAGCACCGGAACAGTCTCAAGTTGCACATGAACTCGCACACGGGGAACTTTTCGATATGCGACGTGTGCGGGAAGACATTGTCGAGCAAGGAAAAGCTCAAGTTTCACCTGAGGACCCACACCGGTTTCAAGCCGTACAGCTGCACGTTCTGCGGCAAGAGTTTCACCAAGAAACCGATCCTCGTCGAACACGTCAGGGTGCACACGGGAGAGAAGCCGTACGTCTGCGACTACTGCACCAAGTCATTCTCCCAGAGAAGCAGTTTGGTGATACACATGCGCGGCCACACCGGAGAGAAACCCTACGTGTGTCAGTTTTGCACCAAGGGTTTCGTGGCCAAGGCGATGCTCACGATTCACCTGAAGTCTTGCAAGGGACTGTTCCACATTTCCAAGACGGAAATCGAAGCGAAGTTTCATTCACCCGTCGATCACTCCCCGTCCCGCCACAGTATTAACTCTCATCCCACCCTTTCCAGGCTGACGCGGGCCTGTACCCAGTCGGACGTTGAAGAGATCGTCATCCAAGTTATAAACGATGCTCCAGACGACTTACCGACGCTCGTGGACCTTAAGGAAAACGTCAAAGTAGAGCTGCACCCTTGCACGGAGTGCGAGATGACATTCCAAAATGTCACCGGATTGGCATTGCATGGCTACAAGCACTTCAGACGCTACGTTTGCCCGCTGTGCGGTTTCGTGACGAAGAGCAAAACACGACAACCCATTATAAGTCACATCAAGCGCCACGAGGGCAAGTACGCGTACAGATGCGAAGTATGCCGCAAGGGATTCCTCTGCAAGAGACAGCTGGACGACCACATGGAAATCCACGCCGATATACCCAGGTACGAGTGCGAGATATGCAACAAGAGGTTCACCGTCAGACGTTACCTTAACGTTCACAAGGCGTATAATCACAAACGCGAGCTTTATGGGGTCGAAGAGATCTATCAGTGCGAGGTGTGCGGCAGAGACTTTACGTTCGAAAAGTCTTTGACCCGGCACTTGAGCACCATCCATAAGATCGGCGAAGATAGGACGGTAAAGTGCCCGGTATGTCAGAAGGTGATAGCGAACAATTACAATTTGAAGAAGCACATGAGGGTGCACACGGGGGAGAAGAAGTTCTGCTGCGACTTGTGCGGTAAAGCGTTCGCAGAGTTGAAGTATTGGAAACAGCACCAGAAAGTCCACGCCAAGGTGCGGTACAGGGGTGAAGCGGAAGAGGAGACGGTAGCGTATGTGGTCGAGGGTGTGTTCTTGGACTCTGAATCCGCGTGCGGGATCGGTCGAGTCAAAAAACGTTCGGTCAAAAAGCCCACACGAGCGGAATGGGACAGAAAGAGGCTGTGCAACGTGTGCGGCAGATTTTTCCCACAAAAAACCCTAAACAGGCACGTTAAAGCCCACGGACCCTTCGACTGTTCGCAGTGTTTCCTCAGTTTCAAATCGGAGGAGCTTCTGGCCGACCACCTCAACGTCCACAAGACCACCCATTACGACTGCGACAAGTGCAACATGATCTTTAAAATGCCCAAGGAACTGGCCCTTCACCGTTTCGCTCACGTGAGGAAATACGTTTGCCCTTTGTGCGGGTTCGTCGCCAACAGTCGTAGCAGCAACTCTATCATAGCTCATATTAAACGGCACGAGGGCAAATACAAAGTGCGGTGCGAGATTTGCAAGAAGGGGTTCCTCAGCCAGCGGAAGCTCGACGATCACATGGAAGTGCACGAAAACGTGCCCAAATACGAGTGCCAGTTGTGTTGCAAGAGGTTCACGGTCAAGTCTTACTTAACTTTGCACCACACCCTCAATCACAAGAAGGAACTGTTTGGGATCGAGCAGATTTACCAGTGCGAGGTGTGCGGCAGGAACTTTACTTTCGAGAAATCTTTGAGGAGGCACCTCAGCGCCATACACAAAATCGGTGAAGATAGGACGGTAAAGTGTTCGGTATGTCAGAAGGTGATAGCGAACAATTACAATTTGAAGAAACACATGAGGGTGCACACCGGCGAGAAGAATTTCGGTTGCGAGATGTGCGGGAAAGCGTTCTCGGACCGGAAATATCTCAACAAACACATGAACGTCCACTCGAGGGAGTAG
Protein Sequence: METKQAVPVTYFTPIVTIDEIKDNPPTVTKETVPKVEIKDEIEETPPETKRKRGRPRKIEPDPPQKKKKRNKRKSTKPKKKPQTVETDDDVTVEIKVEPKDEDELIETPVTSAKLYKCPACKDDRDRTEKELKEHYKTEHPGKRLRASRFSQDLHACDVCGKSFKAASSLKDHMETHNNYYYCESCNHSTKKILDHVVHLRMHSLVGLFQCLMCEFSTVEINEINDHVTNHEEILKYWCDSCKKSFQILSHFQEHDNFHTGLKPFDCEYCGKCFMYSRYLHAHKTNLHKEDMNCPSNYECVICNKRYQHRNSLKLHMNSHTGNFSICDVCGKTLSSKEKLKFHLRTHTGFKPYSCTFCGKSFTKKPILVEHVRVHTGEKPYVCDYCTKSFSQRSSLVIHMRGHTGEKPYVCQFCTKGFVAKAMLTIHLKSCKGLFHISKTEIEAKFHSPVDHSPSRHSINSHPTLSRLTRACTQSDVEEIVIQVINDAPDDLPTLVDLKENVKVELHPCTECEMTFQNVTGLALHGYKHFRRYVCPLCGFVTKSKTRQPIISHIKRHEGKYAYRCEVCRKGFLCKRQLDDHMEIHADIPRYECEICNKRFTVRRYLNVHKAYNHKRELYGVEEIYQCEVCGRDFTFEKSLTRHLSTIHKIGEDRTVKCPVCQKVIANNYNLKKHMRVHTGEKKFCCDLCGKAFAELKYWKQHQKVHAKVRYRGEAEEETVAYVVEGVFLDSESACGIGRVKKRSVKKPTRAEWDRKRLCNVCGRFFPQKTLNRHVKAHGPFDCSQCFLSFKSEELLADHLNVHKTTHYDCDKCNMIFKMPKELALHRFAHVRKYVCPLCGFVANSRSSNSIIAHIKRHEGKYKVRCEICKKGFLSQRKLDDHMEVHENVPKYECQLCCKRFTVKSYLTLHHTLNHKKELFGIEQIYQCEVCGRNFTFEKSLRRHLSAIHKIGEDRTVKCSVCQKVIANNYNLKKHMRVHTGEKNFGCEMCGKAFSDRKYLNKHMNVHSRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -