Basic Information

Insect: Cylas formicarius
Gene Symbol: -
Assembly: GCA_029955315.1
Location: JARGXY010000007.1:19849258-19856358[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6e-05 0.0048 17.6 2.2 1 23 397 419 397 419 0.97

2 18 4.4e-05 0.0035 18.1 1.8 1 20 425 444 425 447 0.94

3 18 6.8e-06 0.00055 20.6 1.4 1 23 453 475 453 475 0.98

4 18 0.00025 0.02 15.7 7.8 1 23 481 503 481 503 0.98

5 18 0.00014 0.011 16.5 4.7 1 23 509 531 509 531 0.99

6 18 2.6e-05 0.0021 18.7 5.3 1 23 537 559 537 559 0.97

7 18 1.4e-05 0.0011 19.6 8.6 1 23 565 587 565 587 0.97

8 18 1e-07 8.3e-06 26.3 2.7 1 23 593 615 593 615 0.98

9 18 7.6e-05 0.0061 17.3 6.7 1 23 621 643 621 643 0.97

10 18 0.00015 0.012 16.4 5.6 1 23 649 671 649 671 0.97

11 18 3.5e-07 2.8e-05 24.7 3.1 1 23 677 699 677 699 0.98

12 18 1.1e-05 0.00088 19.9 8.0 1 23 705 727 705 727 0.98

13 18 5.7e-06 0.00046 20.9 8.9 1 23 733 755 733 755 0.98

14 18 1.8e-05 0.0014 19.3 7.7 1 23 761 783 761 783 0.98

15 18 2.4e-05 0.0019 18.9 6.7 1 23 789 811 789 811 0.97

16 18 2.7e-05 0.0022 18.7 0.8 1 23 817 839 817 839 0.98

17 18 0.092 7.4 7.6 5.0 1 23 849 871 849 871 0.98

18 18 6.7e-07 5.4e-05 23.8 1.2 1 23 877 899 877 899 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6e-05	0.0048	17.6	2.2	1	23	397	419	397	419	0.97
2	18	4.4e-05	0.0035	18.1	1.8	1	20	425	444	425	447	0.94
3	18	6.8e-06	0.00055	20.6	1.4	1	23	453	475	453	475	0.98
4	18	0.00025	0.02	15.7	7.8	1	23	481	503	481	503	0.98
5	18	0.00014	0.011	16.5	4.7	1	23	509	531	509	531	0.99
6	18	2.6e-05	0.0021	18.7	5.3	1	23	537	559	537	559	0.97
7	18	1.4e-05	0.0011	19.6	8.6	1	23	565	587	565	587	0.97
8	18	1e-07	8.3e-06	26.3	2.7	1	23	593	615	593	615	0.98
9	18	7.6e-05	0.0061	17.3	6.7	1	23	621	643	621	643	0.97
10	18	0.00015	0.012	16.4	5.6	1	23	649	671	649	671	0.97
11	18	3.5e-07	2.8e-05	24.7	3.1	1	23	677	699	677	699	0.98
12	18	1.1e-05	0.00088	19.9	8.0	1	23	705	727	705	727	0.98
13	18	5.7e-06	0.00046	20.9	8.9	1	23	733	755	733	755	0.98
14	18	1.8e-05	0.0014	19.3	7.7	1	23	761	783	761	783	0.98
15	18	2.4e-05	0.0019	18.9	6.7	1	23	789	811	789	811	0.97
16	18	2.7e-05	0.0022	18.7	0.8	1	23	817	839	817	839	0.98
17	18	0.092	7.4	7.6	5.0	1	23	849	871	849	871	0.98
18	18	6.7e-07	5.4e-05	23.8	1.2	1	23	877	899	877	899	0.98

Sequence Information

Coding Sequence: ATGAATAACGAGACTCAAGGTGTTTTGCAGGGCGGTCACGGCTCGAACGGCGAGGGTAGCTCGCAAAGACCTCCCCCAACGACGTCGGTACCGACAGATCTGAGGGTCAACACGACCGCTTTAAATGCCGTCGCCCTCAGTAGCGTCGCGAAATATTGGGTGTTGACGAACCTGTTGCCTGGACCAATACCCCAGGTATCGGTCTACGGATTGTCCGGCAGGGAAGGGCAAGGCAAGCTCACGCAGGATGCGATGCTCAGTCAGCATGCGGCCGGGTTGCTTCAGGCTGATCAGTTACTCCTGCAGCAGCATCCCCAAATCCCGGTCAGCATTTCTCAGGGAAATGTAGGAATACCGAGCGGGCCGATTCATCTCGACAACGGGCACCCGTTGGCCCAGCAGCAACAGTCGCAGCAGTCCGATCCTGGCCATATGGGTCGTGAATTGAGGATGGCTCACTCGCAGAATCATGGCCAACAGAATCTTGTCCAGGTGCAAGTACAGGGAAACATGGTCTCCGTCATAGACGAGAACAAGGAACATCCGAAGGACATGATTCAGTCTCACCTGCAGGCCGCGCATATGCAACTTAACGAGTCACAACTCACCCAACAAGCGCTTACGGTGCAGCAGCTGCAACAGCTTCAGGTCCAACAGGTTCTGGACGGCAGTTCAGTTCGAATGGATTCATCGGTCGAGGGCAACCCGACCCAGCACGGGGCGCAGCAGGGCACGATCAACGACGGTATTGACATGGTAAAGGACGAGAAATCAATGCAGAACTGTAAGTTCGTCTCGCCCGCGCAGCTCGGTCTCCAGGAGCTCAAAGGAAATCTGATGGACGTTCGTACCGCGGACGGTACCCTGGTGAAGATCCAGACGAATATACAGGAACAGGAACTCGCAAAAACACTCGGTGTGGAGATGGTGCAAAACATGTATAAGGTTAACGTCGACGACCTCAACCAGTTACTCGCATATCACGAGATTTTTGGCAAGCTCCAGGGCCAGGGCGATGTGCCGGTTCCCACGTCGCAGAACGGTGCCGCGGGTGGTATTGGCGGCGTCGCTTCCACGACGAACCAAGCATCCGGCGCGATCGTTGCAAAGGACGAGCAGGAGGCGTCGACGAGCGGTGGGGGCGGCCAAACCCCCGAGACGAACTCCGCGTCGGTCATCACCGGCAACCATTCCTGTGATATATGCGGCAAGATATTCCAGTTCCGGTACCAGCTGATCGTGCACCGACGTTACCACACCCAACGCAAACCCTTCACGTGCCAAGTGTGCGGCAAAGCGTTTTCGAACAATCAGGAACTTGCGCGACACGGCAAATGTCACCTGGGCGGCAGCATGTTCACGTGCACCGTGTGTTTCCACGTGTTCGCGAACGCGGCGTCGCTCGAGCGTCATATGAAACGTCACGCCATAGACAAACCGTATCACTGTAATACGTGCAGCAAGACGTTCGCGCGCAAGGAGCATCTCGACAACCACATCAGGCACCACACGGGCGAGACGCCATACCGATGTCAGTTTTGCGCGAAAACGTTCACGCGCAAGGAACACATGGTCAATCACGTGCGTAAACACACTGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGTCGTTCACGCGGAAGGAGCACTTCATGAACCACGTGATGTGGCACACGGGCGAGACGCCGCACTGCTGTACGATATGCGGCAAGAAGTACACGCGCAAGGAGCATCTGTCCAATCATATGCGCAGTCACACCAACGACACGCCCTTCAGGTGCGAGATTTGCGGCAAGTCGTTCACGCGCAAGGAGCACTTCACCAACCACATCATGTGGCACACGGGCGAGACGCCGCACCGCTGCGATTTCTGCTCGAAGACGTTCACCCGCAAGGAGCACCTGTTGAACCACGTGAGGCAGCACACGGGAGAATCGCCGCACCGCTGCGCGTTCTGCGCGAAATCGTTCACGCGCAAGGAACACTTGACCAATCATGTGCGTCAGCACACTGGCGAGACGCCGTTTAAGTGTACCTACTGTCCGAAGGCGTTCACCCGAAAAGATCACCTGGTGAACCATGTGCGGCAACACACGGGCGAGTCGCCGCACAAGTGCACCTTTTGCACCAAGTCGTTTACGCGCAAGGAGCACCTCAACAACCACATCAGGCAGCACACGGGCGAGTCGCCGCACCGTTGCCACTACTGCTCCAAGTCGTTCACCAGGAAGGAGCACCTGACGAACCACGTGCGGATACATACCGGCGAGTCGCCGCATCGTTGCGAGTTTTGCCAGAAGACTTTCACGAGGAAGGAGCACCTGACGAACCATCTGAGGCAACACACCGGCGAGACGCCGCACTGCTGCAACGTCTGCTCCAAACCCTTCACGCGGAAGGAGCACCTGCTCATTCACATGCGATCTCATACCGGCGAGCGACCCTTTACCTGTAACGAGTGCGGCAAGTCCTTCCCCCTCAAAGGCAACCTGTTGTTCCACCAGCGATCGCACAACAAGGGGGCACAGGCGGACCGGCCGTTCCGTTGCGACCTGTGCGAGAAGGATTTCATGTGCAAGGGTCACTTGGTGTCTCATCGACGATCGCACAGCGGCGAGAGGCCGCACGTGTGCCCCGACTGCGGCAAAACATTCGTCGAGAAGGGCAACATGCTGCGTCACCAGAAGAAACATGCGTTGGACAGCGGAGGCGGGACTACTGCCACCCAAGCGTCAAGCCTCGCCCAAGCGATGGGCGGAGGCGGCAGCCAGCCGAACGGACTCCCGCAGCAGGGTCAACAAAACACCGGTGCGGGCGTTCAAATACCGGTCAATCAGGCGTCGCAGCAGAGTGCGGGGCATATGATGCATGGGCCCGCCCACCACTCAGTCGTCGTGCCGACCGCGAACGGGAATGTGTTGACAAGCTATTAA
Protein Sequence: MNNETQGVLQGGHGSNGEGSSQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLSGREGQGKLTQDAMLSQHAAGLLQADQLLLQQHPQIPVSISQGNVGIPSGPIHLDNGHPLAQQQQSQQSDPGHMGRELRMAHSQNHGQQNLVQVQVQGNMVSVIDENKEHPKDMIQSHLQAAHMQLNESQLTQQALTVQQLQQLQVQQVLDGSSVRMDSSVEGNPTQHGAQQGTINDGIDMVKDEKSMQNCKFVSPAQLGLQELKGNLMDVRTADGTLVKIQTNIQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQGQGDVPVPTSQNGAAGGIGGVASTTNQASGAIVAKDEQEASTSGGGGQTPETNSASVITGNHSCDICGKIFQFRYQLIVHRRYHTQRKPFTCQVCGKAFSNNQELARHGKCHLGGSMFTCTVCFHVFANAASLERHMKRHAIDKPYHCNTCSKTFARKEHLDNHIRHHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAFCAKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHIRQHTGESPHRCHYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCNECGKSFPLKGNLLFHQRSHNKGAQADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPHVCPDCGKTFVEKGNMLRHQKKHALDSGGGTTATQASSLAQAMGGGGSQPNGLPQQGQQNTGAGVQIPVNQASQQSAGHMMHGPAHHSVVVPTANGNVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -