Cfor004467.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000002.1:37731068-37732742[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-07 0.00027 21.0 0.0 7 37 24 54 18 61 0.80 2 2 0.62 4.6e+02 1.0 0.0 11 23 113 126 112 128 0.80
Sequence Information
- Coding Sequence
- ATGCCGCGAaaatataaaaggaaaatagGGGCACCCGTTCGTGCTGCTTGGTCTGAAGAAGTCCTTTACAAAGCTTTTGAGGAAATGGATAAAGGCCAAGTCGGTGTAAATGAAGTATCTCGTCGTTATGGTATTCCATCTCGAACTTTGAGGAGGCGATATGCTAAAAAAAGCTGTGAAAAACTTACTTTGGgAAAACATCCCACACTGGACTTTGACAACGAGAAACGTCTCGTAGCGCACATACAACAATTAGAAAAGGCAGGGTTTCCCACAACACGACAGGATGCAAGAAGACGAAGAAGAAGggttttgaaaattcttttaacAAAGAGACACGTATGGCTGGCAGAAGGTTTGTCTATTGCAAGGGCTCAAGGATTAAATCGAGATGAAGTAAACGAAATGTTTGAATTGTTGCTAAAAGCACTAACTGAAAATGATTTGATCGATAAACCTGATCGAATTTATAATACTGACGAAACTGGAGTTCAAATGAACAATAATCCTGGTAAAGTTATTGCTACTAAAGGTGCCAAAGTAGTAAATTCCATCACTTCTAGTGAAAAAGGTGAGACAATGTCAATTATAGCTTGCTGTAACGCTGTTGGCAACTATGTTCTTCCGGTGGTCATTGTCAAGAGGGTCAATAAAAGACCAGAGTTCCAAGAGGGTCTTCCGCCCGGAGCCAACGTGTACATGAATAAAAAATCTGCCTACGTCAGAACTCTTTCAAAAGTGGCTGAAAGAACAGTTCGTGCCAATAAAAGCACAGGGCAAGGTTACGCATGGGCTCGCGCTGCTACCTCTTCTAATGCTGTGAATGGGTTTCGTGCATGTGGTATTTTCCCGTACAATCCTTCTGCTATTCCCGACAGCTACTTTGCTATCTCTAATAACAGCTTTCAAAATCTAGATGAAGGAAACCTTGCTCAAGACCAACCAGTAGCAAGGGAACTCGACGCTAATGCTGATTTGATTTCATATTATGTTCCTGGTCCATCGTCATCAACTGTCAAGCCGGAGCCTGATTTCGGGTTCTTACTATATGAAGATCTTGCAGCAGACGCAATTGTTATTCCTTTAGAAGGAAATGTCAGTCCGTCCATCCTATCTCAGAATCATAATGTTGAAACTGTAGAAGTCATAACTCCAGGTGAATATTATCTTAAAGAATGTTCTCCGGTCGTAGAAATTCAAAATCTAGATGAAGGAAACCTTGCTCAAGACCAACCAGTAGCAAAGGAACTCGACGCTAACGCCGATGTGAATTCATATTATGTTGAGCCCCAGCCTGGTCCATCGTCGTCAACTATCAATATGGAGCCTGAAACTGTATAA
- Protein Sequence
- MPRKYKRKIGAPVRAAWSEEVLYKAFEEMDKGQVGVNEVSRRYGIPSRTLRRRYAKKSCEKLTLGKHPTLDFDNEKRLVAHIQQLEKAGFPTTRQDARRRRRRVLKILLTKRHVWLAEGLSIARAQGLNRDEVNEMFELLLKALTENDLIDKPDRIYNTDETGVQMNNNPGKVIATKGAKVVNSITSSEKGETMSIIACCNAVGNYVLPVVIVKRVNKRPEFQEGLPPGANVYMNKKSAYVRTLSKVAERTVRANKSTGQGYAWARAATSSNAVNGFRACGIFPYNPSAIPDSYFAISNNSFQNLDEGNLAQDQPVARELDANADLISYYVPGPSSSTVKPEPDFGFLLYEDLAADAIVIPLEGNVSPSILSQNHNVETVEVITPGEYYLKECSPVVEIQNLDEGNLAQDQPVAKELDANADVNSYYVEPQPGPSSSTINMEPETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -