Cfor017463.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000009.1:20141960-20143103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 2.3e-05 24.4 0.0 14 37 36 59 23 66 0.80 2 2 6.3 4.7e+03 -2.2 0.0 18 22 144 148 142 158 0.55
Sequence Information
- Coding Sequence
- ATGACTTATTCACAGaccaTATGCCGCGAAAATATAAAAGGCGGGGCACCCGTTTGTGCTGCTTGGTCTGAAGAAGCCCTTTGCAAAGCTTTTGGGGAAATGGATAAAGGCCAAGTCGGTGTAAATGAAATATCTCGTCGTTATGGTATTCCATATCGAACTTTGAGGAGGCGATATGCTAAAAAAAGCTGTGAAAAACTTACTTTGGgAAAACATCCCACACTGGACTTTGACAACGAGAAACGTCTCGTAGCGGCcatacaaaaattagaaaaggcAGGATTTCCCACAACAGGACATTATGTGAGTCTTCTTACTTCTTCTTTTGAATTTGCCGAGAAACTGGGTTTCGAAATTTCTTTTAACAAAGAGACACGTATGGCTGGTCAGCACTGGCTCAAATCATTTCTTGAACGATACCCAGAACTCAGTATTCGCCAGGCAGAAGTTTTGTCTATTGCAAGGGCTCAAGGATTAAATCGAGATGAAGTAAACAAAATGTTTGAATTGTTGCTAAAAATACTAACTGAAAATGATTTGATCGATAAACctgatcaacaaaaaaaaagaccgaGGTTTAGCTCTGAAAGTGAACAAGAGTTCGATGAATCAGATTCTGACCAGACTAAATCTGATAAAGAAAATACTCAATGCAGAGAATGTTTCGATGACTATGCAAGTACCAACTCCACGGCGGACTGGATTCAGTGCCTGATGTGTAAACTCTGGTTACACGAAGATTGCACTCTATATGGCGATTACTGTAATAGCTGTGGACACAAGAAGAAGCTTGCAGCTCTAAAAGCTAACCTGGAAAAGGGGAATTCAAAGAATAAGTAA
- Protein Sequence
- MTYSQTICRENIKGGAPVCAAWSEEALCKAFGEMDKGQVGVNEISRRYGIPYRTLRRRYAKKSCEKLTLGKHPTLDFDNEKRLVAAIQKLEKAGFPTTGHYVSLLTSSFEFAEKLGFEISFNKETRMAGQHWLKSFLERYPELSIRQAEVLSIARAQGLNRDEVNKMFELLLKILTENDLIDKPDQQKKRPRFSSESEQEFDESDSDQTKSDKENTQCRECFDDYASTNSTADWIQCLMCKLWLHEDCTLYGDYCNSCGHKKKLAALKANLEKGNSKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -