Cfor011166.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000006.1:12716648-12723311[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 2.1e-06 27.7 0.0 4 42 13 51 11 54 0.93 2 2 9.6 7.2e+03 -2.8 0.0 21 30 94 103 94 104 0.83
Sequence Information
- Coding Sequence
- atggcaaaacgacaatataataaatggtCTATGCAAAATATGAATGCAGCAATACAAGATTTTAATAATGGGAAATTACGATTCAATGAAGTATGCAGGACATATGGTATTCCAAAACCGACCTTTCGACGTCATTTAAAAGGTCTAaattctcagaaaaaaataggaagaCCAAGCGATTTGACGGAGCAAATGGAGACCGAATTGGTTCATCACATTTTGGATTTGGAGTCTAGGATCTTTGGGTTAACTATCACAGATTTAAGACATCTAGCATTTCAGTTGgcagaaaaatacaaacttccGCACCGATTTCATAAGGTGCAAGAGTTAGCCGGTTGGAAATgCACATTGGACATCTTACCCATAGTTAGCATAATTTTAAGTTTGAGGGATTTGGAGTACACTCTGAACAATGGAAACGAGTCGAGCTATAAGTTGATGAATGAACATGAACCCCACCATCAAGCCGAATCGATATTTTATTCGGATAAATTGAGATAA
- Protein Sequence
- MAKRQYNKWSMQNMNAAIQDFNNGKLRFNEVCRTYGIPKPTFRRHLKGLNSQKKIGRPSDLTEQMETELVHHILDLESRIFGLTITDLRHLAFQLAEKYKLPHRFHKVQELAGWKCTLDILPIVSIILSLRDLEYTLNNGNESSYKLMNEHEPHHQAESIFYSDKLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -