Cfor019471.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000010.1:18573171-18573866[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-13 1.7e-10 40.8 0.0 1 41 17 57 17 60 0.91 2 2 6.2 4.6e+03 -2.2 0.0 17 22 131 136 130 143 0.68
Sequence Information
- Coding Sequence
- ATGCCGACCAATTACAATCGCACCGGAAGTTGCTCCAGGGCTAATTGGACTGAACAACAGTTAACTGAAGCCATTCAAGCCGTTAATGAAAAAAGAATGGGAGTTAATGAGGCTTCAAGAAATTTTGGAGTACCGGCCACTACTCTACGAAGAAGAAAAGTGAAAAATTATGTGAAGAAAGGCCCTCTTGGACCTTCGTCAACATTAGGCGACGCTGCTGAAGAAAAGTTGGTTAAACACATcctaaaacttcaaaaaaacatattttctccTACACGATTCGACGTGCGAAGCATGGCTGAACAGCTGGAAATTAAACATCGTTTTAATAAGGAATCGAGACTAGCTGGTTTTCCGTGGCTTAAGTTATTTCTTCAGAGATATCCAGAGCTGTCAGTGAGAAAAGCAGAAGGGGTCTCCATTAATCGATCCTTGGGTGTGAACAAAAAAGACGTACAGGTTTATTTCCAGCTGCTAGAAAATACTCTCAACGAAAACAATCTTATTGGAAAACCtagacatatttttaatattgatgaGACTGGTCTGCAGCTAAATAATAGGCCGGGGCTTGTCATAGTCAAGAAAGGATCTCAAAACATAGCAAGTATCAGCTCCGGTGAAAAAGGAGAAACTATCACAGTTATAGCGTGCTGTAACGCGGAAGGTGTTTTTATTCCCCTACCTGCGTTATga
- Protein Sequence
- MPTNYNRTGSCSRANWTEQQLTEAIQAVNEKRMGVNEASRNFGVPATTLRRRKVKNYVKKGPLGPSSTLGDAAEEKLVKHILKLQKNIFSPTRFDVRSMAEQLEIKHRFNKESRLAGFPWLKLFLQRYPELSVRKAEGVSINRSLGVNKKDVQVYFQLLENTLNENNLIGKPRHIFNIDETGLQLNNRPGLVIVKKGSQNIASISSGEKGETITVIACCNAEGVFIPLPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186945;
- 90% Identity
- -
- 80% Identity
- -