Cfor018766.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000010.1:7633011-7636567[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-10 1.5e-07 31.3 0.0 1 39 299 338 299 342 0.90 2 4 4.1e-13 3.1e-10 40.0 0.1 1 39 353 391 353 394 0.95 3 4 1.4e-18 1.1e-15 57.4 0.0 1 45 408 453 408 453 0.98 4 4 2e-16 1.5e-13 50.6 0.0 1 39 460 499 460 503 0.94
Sequence Information
- Coding Sequence
- ATGCGTGCGCCGCCGGAAAGAGACGAGGCGATCTATCACGGGGAGGCCTTCTCCGTGTGCAGCATCCCCCCTCGGAGGAAGAACGACTCTCGAGAGTTTAGTATAGGCCGTGCCGGCGCGAAGTACAACGCCGCACCCGGTggttgtTCGCTTCTAAGGACCGCCGATCAGCTCAAAATCAAAGGACTGTGCGACTCCGACGAAAAAAGAACTGCTACCTCTACCGTGCCGCCTCTAGTTTCTAGCGAACTCTACAGGAAATCGTCTCCCACGCATCCGGAAGACAATAACAGAAAGTACAAGTACCGACGCTTAAATCGAAAAGGACGCGGGCCGCCTTACGACAATAAGAACAAACCCGGGCTGGAAAATGATATGCCCGTAGAGGGTCGCGGCCTCCCGCTACCCGAACAAGAAACACCGCTGAACATGAGTAGCCACGGTATGACGTTGTTCTCGCAGTTCGACGCGGAAGATTTCCCTCCGGAACCGCCGGCGCCGTCCGCCATCCCCGTCGGCCACCTGGACATGTCCGACCACTCGCCCACCATGCTGACGAACACCCCCATCCACCGTACCGACCTTTCGGACGCGACCACCAAGTATACGATGGAAATCAAAAAGGAAGCGGACGTCAAGTTCGAAACATTACGCTCCTTCGACCAGGACAGCCTCCTAGAGATGGACTCGCACATGAGCGGCGACCACTCCATCGGCAGCCACGAGGACCTGGACCTGCAGCACCACCACATGGACTACGGCGTCGGCATGAGACCCGGCATGTCCAACAGGCTCGGTATTGGAAACGCGGGCGACACTAAGGACAACGGCCACGGCGATAACGTCCACCAGATGACGCCCAGAAGTCATACGGGAGGCGGGCCCAAGACCTGGACCCAAGAGGATATGGACATGGCGCTGGACGCGTTGAAGAATCACAACATGAGTCTCACCAAGGCGTCCGCTACGTACGGCATCCCCTCCACGACGCTGTGGCAGCGCGCGCATCGTCTCGGCATCGACACGCCCAAGAAGGAGGGGCCGACCAAATCGTGGACGGAGGAAAACCTCAACAACGCGCTAGAAGCGTTGAGGACGGGCACGATATCCGCGAACAAGGCCAGCAAAGCCTACGGTATCCCGAGCAGTACCCTCTACAAAATAGCCCGGAGGGAGGGTATAAGGTTGGCGGCGCCGTTTAACGCGGCGCCGACCACCTGGACACCCGAAGATCTGGAGAAAGCTTTGGAGTCGATCAGGACGGGTCAGACGTCCGTGCAGAAGGCATCCACGGAGTTCGGGATACCGACGGGGACGCTGTACGGGCGGTGCAAACGCGAAGGGATCGAACTGTCGCGGTCGAACCCGACGCCGTGGTCCGAGGACGCGATGGGCGAAGCCCTGGAGGCAGTCAGGTTAGGTCACATGAGTATTAACCAGGCGGCGATCCACTACAACCTGCCCTATTCGTCGCTGTACGGCCGCTTCAAGAGGGGCATCAAGTACGACTCGGACAACATAGAGATAACGCAGGAGGCGCAGTCCCCGATGGACGTCCATTCTTTCGCGGGAATCGAGTTTAGCAACGGGCAACAGATCCAGTACCCGAGCCAGCCGAACAGCTGA
- Protein Sequence
- MRAPPERDEAIYHGEAFSVCSIPPRRKNDSREFSIGRAGAKYNAAPGGCSLLRTADQLKIKGLCDSDEKRTATSTVPPLVSSELYRKSSPTHPEDNNRKYKYRRLNRKGRGPPYDNKNKPGLENDMPVEGRGLPLPEQETPLNMSSHGMTLFSQFDAEDFPPEPPAPSAIPVGHLDMSDHSPTMLTNTPIHRTDLSDATTKYTMEIKKEADVKFETLRSFDQDSLLEMDSHMSGDHSIGSHEDLDLQHHHMDYGVGMRPGMSNRLGIGNAGDTKDNGHGDNVHQMTPRSHTGGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEITQEAQSPMDVHSFAGIEFSNGQQIQYPSQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -