Cstr020259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
nfxl1
Assembly
GCA_947568885.1
Location
OX387696.1:3387139-3389610[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1 2.7e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 22 0.032 8.9e+02 0.7 0.4 4 10 169 175 168 175 0.96
3 22 1.5e-07 0.0043 17.7 15.9 3 19 186 202 185 202 0.95
4 22 1.1e-06 0.029 15.0 12.2 3 19 239 255 237 255 0.91
5 22 0.79 2.2e+04 -3.8 1.7 5 10 279 284 279 284 0.90
6 22 4.2e-10 1.2e-05 25.9 12.2 1 19 290 308 290 308 0.99
7 22 4.1e-08 0.0011 19.5 17.1 3 19 345 361 337 361 0.86
8 22 0.63 1.7e+04 -3.5 0.4 1 4 370 373 370 374 0.92
9 22 1 2.7e+04 -5.3 2.2 5 10 384 389 384 389 0.88
10 22 3e-06 0.082 13.6 18.3 1 18 395 412 395 413 0.97
11 22 7.1e-09 0.0002 21.9 17.3 1 19 422 440 422 440 0.99
12 22 0.26 7.1e+03 -2.2 0.8 5 10 468 473 468 473 0.94
13 22 3.9e-05 1.1 10.0 5.1 9 19 488 498 486 498 0.89
14 22 0.012 3.3e+02 2.0 1.0 6 12 497 503 497 504 0.92
15 22 0.0075 2.1e+02 2.7 5.5 3 11 509 517 508 518 0.88
16 22 0.19 5.1e+03 -1.8 3.3 14 18 547 551 547 552 0.85
17 22 0.11 2.9e+03 -1.0 0.4 8 12 568 572 567 579 0.79
18 22 0.0017 47 4.7 6.7 1 11 588 598 582 599 0.91
19 22 0.42 1.2e+04 -2.9 1.5 15 18 613 616 612 617 0.82
20 22 4.5e-05 1.2 9.8 13.2 1 18 628 645 628 646 0.91
21 22 0.00052 14 6.4 13.4 1 15 687 700 687 706 0.88
22 22 0.94 2.6e+04 -4.0 0.6 6 10 736 740 735 741 0.78

Sequence Information

Coding Sequence
ATGGCCCGGCGATATCACGACGCAGCTGCGAAATTGCAGCTAAATGTCCAAAAACATTTGAAGGGAATGAAAGAGCTTTCTTCGTCGGAAGATGAGGAACCTTACGAATCCAGCGTCCTCGAGGGCGTGCTGCAGAGCTACAGGAATGGCGGCGGCGACGCGCACATGCTCAACCGCACGAAGAACATGCTGGAGGAAGCCATTAGTGGCCGCCCTGTAACGTGTCTCATTTGCATAGGCTCCATCAAACGCGCCCATCCCATCTGGACCTGCGACCACTGCCACTCGTACTTCCATCTCTCCTGCATCCAGAAGTGGTCCAACGACAGCATTAGTCTGCGTAGCGAGGAGAACCACGGCCCGATCGCTGTGTTCGTGCCCAAGAAAATTGAGTGGTGCTGCCCTAAGTGCCGGCAGTCGTATAGTAAAGAGGAAATTCCTCGCAAGTATCGCTGCTTCTGTAGCAAGACTGACGATCCTCCATTCCATCCATGGTTGATTCCACATTCGTGTGGAGAGGTGTGTGAAAAAAGGTTGTCAACAGGAGATAATTGCAAACATAAATGTCTGTTGCTATGCCATCCTGGTCCCTGTCCACCGTGTCCACAAACTGTTAATGGAGTATGTTTCTGTGAAAAGGAACGTAAGAGAGTTCGCTGCAGTGCTTCTAAATTGTCTTGTGGCCAACAGTGTAAGAAATTACTCTCATGCAAATCTCACAAATGTGAGAATGTTTGCCACGAAGATGCCTGCCCTCCTTGTACATACACAAGTGTCCAGGCCTGTCTGTGTGGAGCTGAGAAGATCAAAAGACCATGCAATGATCCTCTATGGCGCTGCCAGAAGCGTTGTAACAAACCATTCTCATGTGGTTATCATAAATGTGAAGAAATATGTCACTCAGGTGATTGTGGTGACTGTCCCAACTCTGGAATGCGGTCATGTCCTTGTGGAGCTAATCAGAGATTTGTTCAGTGCCCCGATGTCATGGAGACCTGTATGGGCACCTGTGGGAAGACTAAGGATTATTGTGAACACACTTGCCCAGAGAAATGCCACAAAGGGCCCTGTCCACCATGCCAAGTGTTGATTGAAAAAAAGTGTCAATGCGGCACACACATGAGATCATTACCTTGCAGTAAGGAGTATAAATGCGAAACAAAGTGCCGAGGCATAAGACCTTGTGGAAAACATGGTTGTGCTCGAAAATGTTGCAATGGAAACTGTCCACCATGTGAGAAAATCTGTGACAAGCCACTGCAGTGCGGTCGCCATAAGTGCACAACGGTATGCCATCACGGTCCATGCTATCCTTGTCCCATGGAATCCAAAGTAACTTGCCGCTGTAAAGAAACCTATGTAACAGTTCCTTGTGGTAGAGAGAAACACACTAAACCTCCTAAATGCAGTCGCTTGTGCAAGCTTAAATATAAATGTGGACATGTAGAAGAAAACAAACATTCCTGCCATTTTGGCGATTGTCCTCCTTGTAAGGCAATATGTCATAAGCAGTATGATAATTGTGAACATGACTGCAAAGCTGTTTGCCATGCATTTGTTAGAGTCGTTTTTAAGCAAGTAGAGAAGCCCGCTACGCCATGGGAAGTGCAGCCGCCAAAGACTAAAGTAATGACTCTAGAATGTCCGCCTTGTGAGATTCCTGTTCCTATTGTTTGCTTTGGGGAGCATGAAACAGCAGATCAACCATGCCACTCTGCTTCACGCCGCCCCTGTGGTCGTGAGTGTGGCAGAGGACTTCCGTGCACTAAACACAAGTGCAAACTGCTGTGCCATTTGCACACAGCTGATCCTAACTATCCTAACGTTCCTTATTCCTGCGAACCATGCAACAGGGAATGTCTAGCCACAAGACCAGACAGGTGCAGCCATAAATGTGCTAGAGGTGTTTGCCATCCAGGAGCCTGTCCTTCCTGTGAAGTCATAGAAAAAATTCCATGTCACTGCAAAGTTACCGAATTATACTTACGATGCCGTGAACTGAGTATGGCTACAGAAGAAATGCTGTCATGCAAGCAGCAGTGCCCTAAGAATTTGGAGTGTGGGCACAGATGCAGGAACCATTGCCATCCAGGCATCTGTGTGAGTCAAGTCTGCACAAAGAAAACAAAGGTGTACTGCCCATGCGGGAACTTGAAGAGAGATGCTCCTTGTAATCTTGTAAGAAGTGGTGAGGGGAAACCTTCTTGTGACTCCACTTGTGAAGAAAAACGCATTGCAGCTCAGTTAGAAAGAGAAAAAGAAGAAAAGAGACGTAAAGAGATTGAGGAGGAGAAAAATCGCAAGGAGTTGGCGGAATACGAATGGAAGTTGAGTGGAAAGAAGAAGAAATATAAAGAAAAGAAGGTTGTGACCAATAGGGATGACCGGAATCTGCTGCAAAAGTATTGGATTCCTATCGTTTCGGTCTTAGTTGTTGTAACCGCTGCTTTTTATTTCATAATTTATGTTTGA
Protein Sequence
MARRYHDAAAKLQLNVQKHLKGMKELSSSEDEEPYESSVLEGVLQSYRNGGGDAHMLNRTKNMLEEAISGRPVTCLICIGSIKRAHPIWTCDHCHSYFHLSCIQKWSNDSISLRSEENHGPIAVFVPKKIEWCCPKCRQSYSKEEIPRKYRCFCSKTDDPPFHPWLIPHSCGEVCEKRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSASKLSCGQQCKKLLSCKSHKCENVCHEDACPPCTYTSVQACLCGAEKIKRPCNDPLWRCQKRCNKPFSCGYHKCEEICHSGDCGDCPNSGMRSCPCGANQRFVQCPDVMETCMGTCGKTKDYCEHTCPEKCHKGPCPPCQVLIEKKCQCGTHMRSLPCSKEYKCETKCRGIRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTTVCHHGPCYPCPMESKVTCRCKETYVTVPCGREKHTKPPKCSRLCKLKYKCGHVEENKHSCHFGDCPPCKAICHKQYDNCEHDCKAVCHAFVRVVFKQVEKPATPWEVQPPKTKVMTLECPPCEIPVPIVCFGEHETADQPCHSASRRPCGRECGRGLPCTKHKCKLLCHLHTADPNYPNVPYSCEPCNRECLATRPDRCSHKCARGVCHPGACPSCEVIEKIPCHCKVTELYLRCRELSMATEEMLSCKQQCPKNLECGHRCRNHCHPGICVSQVCTKKTKVYCPCGNLKRDAPCNLVRSGEGKPSCDSTCEEKRIAAQLEREKEEKRRKEIEEEKNRKELAEYEWKLSGKKKKYKEKKVVTNRDDRNLLQKYWIPIVSVLVVVTAAFYFIIYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00023391;
90% Identity
iTF_00411076;
80% Identity
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