Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:5722309-5736397[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0067 0.42 11.8 2.9 1 19 266 284 266 286 0.97

2 14 0.93 58 5.0 0.3 1 23 310 333 310 333 0.96

3 14 0.028 1.7 9.8 4.4 2 22 371 391 370 391 0.94

4 14 1.1 65 4.9 1.3 1 23 426 451 426 451 0.96

5 14 5.7 3.5e+02 2.5 4.2 1 23 778 799 778 799 0.94

6 14 0.0091 0.56 11.4 1.9 1 23 814 836 814 836 0.96

7 14 0.21 13 7.1 0.1 2 23 842 863 841 863 0.94

8 14 8.6 5.3e+02 2.0 0.2 1 23 886 907 886 907 0.73

9 14 0.19 12 7.2 0.6 5 23 969 987 966 987 0.91

10 14 1.2e-06 7.5e-05 23.6 3.1 1 23 1030 1052 1030 1052 0.98

11 14 9.2e-05 0.0057 17.6 0.3 1 23 1057 1079 1057 1079 0.98

12 14 0.0095 0.59 11.3 5.9 2 23 1086 1107 1085 1108 0.94

13 14 5.1 3.1e+02 2.7 0.3 1 19 1115 1133 1115 1134 0.88

14 14 0.16 10 7.4 0.1 3 22 1147 1166 1146 1168 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0067	0.42	11.8	2.9	1	19	266	284	266	286	0.97
2	14	0.93	58	5.0	0.3	1	23	310	333	310	333	0.96
3	14	0.028	1.7	9.8	4.4	2	22	371	391	370	391	0.94
4	14	1.1	65	4.9	1.3	1	23	426	451	426	451	0.96
5	14	5.7	3.5e+02	2.5	4.2	1	23	778	799	778	799	0.94
6	14	0.0091	0.56	11.4	1.9	1	23	814	836	814	836	0.96
7	14	0.21	13	7.1	0.1	2	23	842	863	841	863	0.94
8	14	8.6	5.3e+02	2.0	0.2	1	23	886	907	886	907	0.73
9	14	0.19	12	7.2	0.6	5	23	969	987	966	987	0.91
10	14	1.2e-06	7.5e-05	23.6	3.1	1	23	1030	1052	1030	1052	0.98
11	14	9.2e-05	0.0057	17.6	0.3	1	23	1057	1079	1057	1079	0.98
12	14	0.0095	0.59	11.3	5.9	2	23	1086	1107	1085	1108	0.94
13	14	5.1	3.1e+02	2.7	0.3	1	19	1115	1133	1115	1134	0.88
14	14	0.16	10	7.4	0.1	3	22	1147	1166	1146	1168	0.88

Sequence Information

Coding Sequence: ATGTTTTTATACACATTTATAAACAATTCTATCTCCATATTCCAGGAGCCCGCCCAAAAGAAGCTCCTTCTGGAAAAAATCAAGAAAGAACCAGAAGACTACATCCCACATGAACATAACCCCTCGACACATAAATTCTCAGTGGAAGTGGAAATCGAAGGCATGGACACTGCAGCCCCCGACGAGGACGCTCCCGATTACATGAAGTACCTCTTCAGTCTGTCCAAAGAATCAGAAGAAACTGCGGAGAATCCACAAAACTTAGATTACGCTGATAATACTTTACTATTAGAACAAAAACTTACCATACCAGTGACCGAGGAAGAGAAAAATTGCATCGTAGATGTGAAGAAATTGCAGAAAATGCTAGTTATACTTCATAGGAAATACCCAAAGCAGCTAGAAGTTGTAATGCATTGCAGGAATCAATGGGGGCGGGCGTTCCATGAGAGATGTGCTACTGAATTTAAGAAAGCTCCTAATGAAATCCTCTTACAAGATGTACTTGCTAGATGGAAGCAGTGGACAATAGTGACTAGGGCTAAAGAGAGCCCGTACTGCTATAAGTGCTATATTTGCGACAACGGTTGGTGGACATACACAGAATTCGTTGCACATTTAACTCGGCACACAGCATATAAACTGCAAATACAAACTAGAAACTTAGAGTGTGATATAGTGGCGTATGAAGGCGACTCTCCGGGTGTTAGAGACGTTGAAATACATGGTAAATGCACTAAATGCGCTAAAACTTATAACCATCATTTGACTAATAAGAGAGAAACGGATGCATATTACTATTGCAACTATTGCGATGAGAGATTTCAAACGTGTAGAACCTTAACTAAACACGAAGGTGCATGTCCTCGAAATCCTATAAGAGTCCTAGCTATATCTAAAGCTGGTAAAGAATACTCATTCTTCGATTTCTCTTGCGTTGTATGTCAGACTCTCTTCTTAAGTAATCCTGACTTGGAAGAGCATATGATCATATGCCACAAAGTGCGATCAGACGAACCTATAGTCACTGTGTTCAAAACATGCAAAGATTGCGAACAAATTTATTATAACTTCTACTGTCATGTGTGTCTGAAAAAGAACTTTGTCACGGAATGCAAGCATTGCTTTAGAAAATTCCAAAACAAGCAAATGTTAGAGCATCATTATAGGATGTGGGACAAAATTGCGCAGTGTAGTATTTGCGAGAAATATTTGGTGAAAAGTTGTATGGCAGCGGAGCACTATGCGTTGCATAGCGATGAGTTTCTGTTGGTGCATCGGTGTCTAGTGTGTAAGAAGCTCAAAGTGTTTGCGAGCGATGAAGCGATGAGGAATCACATCAACAAGTATCATAAGAGGTTTGATGCGAGGCGGCCGAAAACTGATAAGATTATTATGCCAACAATAATGCTGCAGCAGTGTATGGTCGATCAAGTGAAGAAAAATCCTCCGAAGCCCGTGACAAAATCCATTACCGCTAAAGCAACTAGTAAGGAGGGCTTCAAACTCACTCGAGGCGAGACTGTACCACAAATTCGAGTCTACATGCCAGCACATAAAAACAAGCCTCAAAAAACTGATGATGAAACTACATCGACAAATACTACAATAGCTCACGACGATACAATTACTATGAGACCTGACGCCGAGCCTACAGATATCACTCCCGTACAGATCAAAAAAGAAAAAGAAGATATAACTGTAATAATACCAAGACTGGTACCTATAAAAATAACAGCACCACCTAAAAAGGTAACAGTAATCAGTGTAAAGGCTATTAAAGTAGAAAAAATGGATATTGACGAAGAAAAGATAACTGAAACCGCACCAGGCGCTCAAAATCCAGTTGGTAAGGAAAAAGAAGGTACTAAGGAAAAAGAAGGTACTACAAAAAAAGAAGTTACTGAAGAAAATGAGGATCGTAAAGACATGAATAACATAATGGCAGAATTGACCGAATTTCTCGATATCAAACCTGAAATTATCAAAGAGGAAAAACTTTCTGATGACGAAGCAGCGCAAGCTACGAAGGAACTCACGAATTTACTCCAAATGTCAAACACGGAATCTGATATATCGAAAGTTTTTAAAGCTTCAAGCACTTTTGCAGAAGAAATAACAGATAACTCGGAACATTCTACAGTATTTCAGATATCTAAAACAGTATTAGAGTCAGTGAAACAAGAAAAACACGTAGTGCATGAAGATGAAGACCCAATAGCGGTGAGCCCTAATACATCAAGTCAAAGTGTCAGTGAAACTTCAGATTTGAGCGCTTTAAATTTAAAGCCAGAAGTCATACTTAAAGCTGGTTATAGAAAGAGAAAAATCTACAAATGTAATAAGTGTGATTTCTCAGGATTCCACAAAGAATACAAGGAGCATATTAATAATCATTGTACCAAACCTATCGCTCAAGAATTCGTCGCTGATGTCTACTATAAATGCACGAAATGCGATAGAGGATTTGCTACTTTAAAAAAGTATGCTTTACACTTTGATAAGCACGGCTACAATTATATGTCGTGCCCGCAATGCGGTCAAGATTTCGAGAGTGTAACTAAACTGATGCCACATCTAAATAACCATTTGAAAGTGCAATTCTTTAAGCTGCAGCTTATAAAAAGCTGCGAAGACACTGATAATTGTAAAGTGTATGAGTGTAAGAACTGTAAAGAGGTGGTGGGGCAGGAGATGTGGTTCGAGCATTGGGAGAAGCATCTGCAGCTGCTGAAGCCATCGGAGAAGGCGCCGCAGGAGAATATAAAGATTGGAGAGCACGGTGAACGTTCTCTTAATGCGGGCTCGCTGAAGGAAGTCTTAGTTTTAATTTTTTTTCTCCAATTACCAGAGACTCTCACCAGACAATTCACGAACGAGAACAGGCGCGCAAAATCCTGCATCGTCTGTTCCCGTGTGTTCGAGCGGAAGAACGACACTAAACGCCACCTGATCGAACATCTTCTAGAGGACGCTTACGCCAACATAGTCACTAATCAGATGCTAAAATGCCAAATATGCGGCGATCTGCACAAAAAAACTGATAGTTACAAGAAGCATATGAGGGATCACGCTAATTTACCTATATACAAGTGTGGGCTATGTAATAAGACGTTCAGTGATTCGAGTAATTTCACTAAACATAAAAAGATACATAATTTGAAGGCGTATATATGTGATATTTGCAGTAAGAAGTTCCAAGCGAAGGCTTCCTTGGAGAAGCATATACAGATGCACATGGAAACAGACCCGATAACGTGCGACCAGTGCCAGCGCGTGTTCCACGACCGCTCCTTCTACAACCGCCACTACCGGCAGCACCACGACAAGATAGTCACCAAATTCAGATGCATGCTCTGCCGAGAGAAGTTTCCGTCGCTCCGCCAGAAATGGGACCATCTGTGGGAGGTCCACAAACAGCGGAAAGAGATAGCTGACTGCCCCATATGCGGCGTCTCGTACAGGAAATTCATCGATGTGAAAAAACACGCTTTTCAGGTACACGGCAAGCATATCACTCTCGCCAGTCTGTGGAGTTTACTCAATAAGATCAGGAATACAGATAGTCTGGCGGAGAGTCTGGAGTTGTTGAGGGGTAAAGGAGAGGGGAGCAAGAGTGAGAAGGTCAAGGAGGAACCGGCCAGCAGTGATGATGATTGTTTATTGATAGAGGAAGAACACGAGACTCTAGTTGTTTATGACTGA
Protein Sequence: MFLYTFINNSISIFQEPAQKKLLLEKIKKEPEDYIPHEHNPSTHKFSVEVEIEGMDTAAPDEDAPDYMKYLFSLSKESEETAENPQNLDYADNTLLLEQKLTIPVTEEEKNCIVDVKKLQKMLVILHRKYPKQLEVVMHCRNQWGRAFHERCATEFKKAPNEILLQDVLARWKQWTIVTRAKESPYCYKCYICDNGWWTYTEFVAHLTRHTAYKLQIQTRNLECDIVAYEGDSPGVRDVEIHGKCTKCAKTYNHHLTNKRETDAYYYCNYCDERFQTCRTLTKHEGACPRNPIRVLAISKAGKEYSFFDFSCVVCQTLFLSNPDLEEHMIICHKVRSDEPIVTVFKTCKDCEQIYYNFYCHVCLKKNFVTECKHCFRKFQNKQMLEHHYRMWDKIAQCSICEKYLVKSCMAAEHYALHSDEFLLVHRCLVCKKLKVFASDEAMRNHINKYHKRFDARRPKTDKIIMPTIMLQQCMVDQVKKNPPKPVTKSITAKATSKEGFKLTRGETVPQIRVYMPAHKNKPQKTDDETTSTNTTIAHDDTITMRPDAEPTDITPVQIKKEKEDITVIIPRLVPIKITAPPKKVTVISVKAIKVEKMDIDEEKITETAPGAQNPVGKEKEGTKEKEGTTKKEVTEENEDRKDMNNIMAELTEFLDIKPEIIKEEKLSDDEAAQATKELTNLLQMSNTESDISKVFKASSTFAEEITDNSEHSTVFQISKTVLESVKQEKHVVHEDEDPIAVSPNTSSQSVSETSDLSALNLKPEVILKAGYRKRKIYKCNKCDFSGFHKEYKEHINNHCTKPIAQEFVADVYYKCTKCDRGFATLKKYALHFDKHGYNYMSCPQCGQDFESVTKLMPHLNNHLKVQFFKLQLIKSCEDTDNCKVYECKNCKEVVGQEMWFEHWEKHLQLLKPSEKAPQENIKIGEHGERSLNAGSLKEVLVLIFFLQLPETLTRQFTNENRRAKSCIVCSRVFERKNDTKRHLIEHLLEDAYANIVTNQMLKCQICGDLHKKTDSYKKHMRDHANLPIYKCGLCNKTFSDSSNFTKHKKIHNLKAYICDICSKKFQAKASLEKHIQMHMETDPITCDQCQRVFHDRSFYNRHYRQHHDKIVTKFRCMLCREKFPSLRQKWDHLWEVHKQRKEIADCPICGVSYRKFIDVKKHAFQVHGKHITLASLWSLLNKIRNTDSLAESLELLRGKGEGSKSEKVKEEPASSDDDCLLIEEEHETLVVYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409822;
90% Identity: -
80% Identity: -