Basic Information

Insect: Cydia strobilella
Gene Symbol: B0310.2
Assembly: GCA_947568885.1
Location: OX387701.1:3982969-3994077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.1 5.6e+02 1.9 0.3 1 10 372 381 372 394 0.72

2 11 0.034 2.1 9.6 0.7 1 23 401 424 401 424 0.93

3 11 0.53 33 5.8 0.2 1 23 428 450 428 450 0.92

4 11 0.0058 0.36 12.0 1.0 1 23 455 478 455 478 0.98

5 11 0.0038 0.24 12.5 0.7 1 23 482 505 482 505 0.96

6 11 6.4 4e+02 2.4 0.1 2 21 518 537 518 538 0.87

7 11 0.13 8.2 7.7 0.2 2 23 591 613 590 613 0.96

8 11 0.013 0.8 10.9 0.5 2 20 629 647 628 650 0.92

9 11 7.6e-06 0.00047 21.0 2.5 1 23 656 678 656 678 0.99

10 11 0.00032 0.02 15.9 2.8 1 23 685 707 685 707 0.98

11 11 0.00015 0.0092 17.0 2.2 1 23 713 736 713 736 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.1	5.6e+02	1.9	0.3	1	10	372	381	372	394	0.72
2	11	0.034	2.1	9.6	0.7	1	23	401	424	401	424	0.93
3	11	0.53	33	5.8	0.2	1	23	428	450	428	450	0.92
4	11	0.0058	0.36	12.0	1.0	1	23	455	478	455	478	0.98
5	11	0.0038	0.24	12.5	0.7	1	23	482	505	482	505	0.96
6	11	6.4	4e+02	2.4	0.1	2	21	518	537	518	538	0.87
7	11	0.13	8.2	7.7	0.2	2	23	591	613	590	613	0.96
8	11	0.013	0.8	10.9	0.5	2	20	629	647	628	650	0.92
9	11	7.6e-06	0.00047	21.0	2.5	1	23	656	678	656	678	0.99
10	11	0.00032	0.02	15.9	2.8	1	23	685	707	685	707	0.98
11	11	0.00015	0.0092	17.0	2.2	1	23	713	736	713	736	0.93

Sequence Information

Coding Sequence: ATGCGGTGCAGTGTACAAAACTGCTCCAACGATACGAAACGAACAACCAAATGCCATGGGATTACATTTCACTTGTTTCCCAAAGAGCCAAATCTCCGGAGTGCCTGGATGGAGGCGCTAGGCATGTCAGACTGGGAGCCGAAGGAGCGAAGCACAATATGCTCGGAGCACTTCCGGAATGATGACTTTTATGAGACCAGATGTGGGTTACGAAAGATCAAGAATGGAGCTGTGCCTGTGTCTGCTCAGGATTTGGCCAATGATCTGGATGCACCAGCTGCTTTAAGGGTGTGCAGGATATGCCTGGCAACGGACTGCAAGATGTACAACATACGGGATCATAAGCTGGAGCAGGCCTTCACAGAAGTCAGTGGGATGACGATGAGTGAGGAAGACAAATTGCCTCAACGTCTCTGCTGGGAGTGCGGCCATCGACTGCTAACAGCTGCCAGGTTTAGAAGCAAAGTTCTTAGAACACATGACCTGCTCACCGGCCTGCCTCACGCCAGTCCATATATCACAATACGCGACATCCGGTCAATAAACCGCCGCCAAAACCAACTAAGAACTCACCTGACATACAAATACTATGATCCTAACGATTTCCACATACACATAATTGATGACGAAATCATCGTCAAATCAGAAATCAAAGACACTGAAGATATCGAAGAAAAAGTACCGCCTATAGCTGAAGTAGAACTAATAAAAGATGAAAAGAATAATACGGAATTATTTTATCAAGAATTCGATAATTATGATGATAATTTTAATGATGCTAATGATAATGGATGTAATAATGATGCAAGTTATGTTGAAGGTAACGAAGTGAATGAAGATAGTGACGATAAAGTGTTGAGTGAAGTGTATGTAAAGAAGAAGCGGAAAGTTAAGAAGGTTAAAGTGAAGAAGAAGGAGAAGGTAGTGAGAAAGAAAGAGGAGGAAGATAATCCAGAGACTACTATGGATAAATACAAAAACTCTGACGTAAAACGCCGCAAGACCACCGACGGCCTCGACGAATCCCTCTTCACCATCACGACACTCGGCTATGACGAGCAAATTGCAGAGATACAAAAACGGCAGGAGAGCACCAACTACAAGAGCGCGCCGTACAAGTGTGGCGTGTGTTATAGAGGGTTCCTTGTACGGGATAGATATGATGCGCACGTCGTAAGGCATAGTGAGCAATCCGGAGCGTACGAGTGTTTCATATGCAAGAGTCGGTTGAAGAGCGCGCGGGCGCTGCGAAAACACCTCACAGCTCAACACACGGAGAAGTTCAGCTGTAAGGGCTGTCCGTTCGTCACCAGGAACAGGGGCGTCGCCCGAGAGCATGAAAAGTGGCACGCGGGCACCAAGTACCAGTGCCCGCACTGTCCAAGCGAATTCGATAAACTGACTACATACATGGGCCACATAAGAATAAAGCACGTGTCGGACTTCGTGTGCGAGCTGTGCGGGTACACCTTCGTCAGCAAAAAGGGCATCGATGTTCACAAGAAGAAGAAACACCGGCTGCAGGACAAGACGGTGGATTTAGAAGGCCCATACTGTGAGACGTGCGAAGTACGTTTCGTGTCAGAAGACGCCCACGCAAGACATCTCAAGTTATCGTCGCGGCATAGCAGCGATAGCGACCCCAATCGCATCCGGAACGACTCACAAAGCATCAACGCGGAGAAGAACGGTCGAATGGTGCGGAGAGTTGAAAGGAGACCCGTCATACACGCGCGCGACGGAGAGAGACAGGACACCGCCGGACCCGTCACTTGCGAACAGTGTGGCATCCAACTACGTGACTTGCGATTGTACGCCCAACACTTCCGGCGCGCGCATCCAGACAAAAATCGAACCAAGTACCCCGCGATGAAAACACCGTGTATGTGCGAGCAGTGTGGACGCATTTTCCAGAGTATGGCCCTCCTAAAAGATCACATGTGGGTGCACACCGGCGAGAAGCGTTTCAAGTGCGACCGGTGTGACAAGAGCTTCACCCAGAAGACGAACCTGGTGTTCCACATGAGGGTCCACAGTGCCACCCGACCCAGCTACGAGTGTCCCCTGTGTGGAAAGCACTTTGCCTTCTTCAATAACCGGCGGAGGCATATGTTTATCCACACCGGTCTAAAACCATTCAAGTGCGAAACATGCGGCAAATGCTTCACCACCGCCGGCGAGCAGCGCGCGCACGTCGAACACGTGCACATGAAAAAACCGTGGCCCAAACGGCAGAGGCACAGGGAGGCTGAGCCCGCGCCGTGGCAGAAATGTCTTGACCCTATGGAAGACTAG
Protein Sequence: MRCSVQNCSNDTKRTTKCHGITFHLFPKEPNLRSAWMEALGMSDWEPKERSTICSEHFRNDDFYETRCGLRKIKNGAVPVSAQDLANDLDAPAALRVCRICLATDCKMYNIRDHKLEQAFTEVSGMTMSEEDKLPQRLCWECGHRLLTAARFRSKVLRTHDLLTGLPHASPYITIRDIRSINRRQNQLRTHLTYKYYDPNDFHIHIIDDEIIVKSEIKDTEDIEEKVPPIAEVELIKDEKNNTELFYQEFDNYDDNFNDANDNGCNNDASYVEGNEVNEDSDDKVLSEVYVKKKRKVKKVKVKKKEKVVRKKEEEDNPETTMDKYKNSDVKRRKTTDGLDESLFTITTLGYDEQIAEIQKRQESTNYKSAPYKCGVCYRGFLVRDRYDAHVVRHSEQSGAYECFICKSRLKSARALRKHLTAQHTEKFSCKGCPFVTRNRGVAREHEKWHAGTKYQCPHCPSEFDKLTTYMGHIRIKHVSDFVCELCGYTFVSKKGIDVHKKKKHRLQDKTVDLEGPYCETCEVRFVSEDAHARHLKLSSRHSSDSDPNRIRNDSQSINAEKNGRMVRRVERRPVIHARDGERQDTAGPVTCEQCGIQLRDLRLYAQHFRRAHPDKNRTKYPAMKTPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCDRCDKSFTQKTNLVFHMRVHSATRPSYECPLCGKHFAFFNNRRRHMFIHTGLKPFKCETCGKCFTTAGEQRAHVEHVHMKKPWPKRQRHREAEPAPWQKCLDPMED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325875;
90% Identity: iTF_00412020;
80% Identity: iTF_00412570;