Basic Information

Insect: Cydia strobilella
Gene Symbol: RREB1
Assembly: GCA_947568885.1
Location: OX387696.1:4407236-4412861[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.99 61 4.9 1.7 1 12 57 68 57 80 0.86

2 11 0.026 1.6 9.9 0.1 1 23 270 292 270 292 0.97

3 11 0.0014 0.087 13.9 0.4 1 23 301 323 301 323 0.99

4 11 0.00087 0.054 14.6 2.0 1 23 329 352 329 352 0.97

5 11 0.0035 0.22 12.7 1.6 1 23 695 718 695 718 0.96

6 11 0.00029 0.018 16.0 1.3 2 23 909 930 908 930 0.97

7 11 0.03 1.9 9.7 5.3 1 23 936 959 936 959 0.97

8 11 0.1 6.5 8.0 1.3 1 23 989 1013 989 1013 0.91

9 11 0.13 8.1 7.7 0.2 1 23 1036 1059 1036 1059 0.95

10 11 0.0022 0.13 13.3 0.2 2 23 1099 1120 1098 1120 0.96

11 11 0.033 2.1 9.6 5.3 1 23 1126 1148 1126 1148 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.99	61	4.9	1.7	1	12	57	68	57	80	0.86
2	11	0.026	1.6	9.9	0.1	1	23	270	292	270	292	0.97
3	11	0.0014	0.087	13.9	0.4	1	23	301	323	301	323	0.99
4	11	0.00087	0.054	14.6	2.0	1	23	329	352	329	352	0.97
5	11	0.0035	0.22	12.7	1.6	1	23	695	718	695	718	0.96
6	11	0.00029	0.018	16.0	1.3	2	23	909	930	908	930	0.97
7	11	0.03	1.9	9.7	5.3	1	23	936	959	936	959	0.97
8	11	0.1	6.5	8.0	1.3	1	23	989	1013	989	1013	0.91
9	11	0.13	8.1	7.7	0.2	1	23	1036	1059	1036	1059	0.95
10	11	0.0022	0.13	13.3	0.2	2	23	1099	1120	1098	1120	0.96
11	11	0.033	2.1	9.6	5.3	1	23	1126	1148	1126	1148	0.97

Sequence Information

Coding Sequence: ATGGAAGACATGAGGGTGGAAAAACAGGAACCTAGAGTGACAAGGACAACAAGCATCGACAGCGATAATCGCTCAGACAGGAGCGAGGAGGACGAGTCTAGAAGGGCGCGCAAAAGGGCTGCGTCAACATCACCATCCCCAATGCCACTCGACAAAAGATTCGCACGATTCGAATGCCCTAAATGCGGCCAACATTTCGAATCCGGCAACGCCTGCGATCTCCACCGCTTCACCGTCCACGGCGACGAAACGCGCGGCTTCAATGATCTCACTTTCGTAGATTTCTCCAGCAAAAAGTTCCCTGAAATTGCTCGAGGAGTCTGCGAGCGAAACCCTCACGTTTCCATCACAGAACAGAGGTACAGATGCGAGATGTGCTGTAGAGACTTTCCATGCAGGCAGGCCTTGGATATACACAGGAAAACCTGTGCTGATCCCGTCAGTGTGCAGAGCCCCGAACGCATCGATCGTCGAGAAGACTTCTTTGCCAAACTCGACTTGAGAAATCGATACGGTATTCCCGGCACTTTAACGCCTCCTATGGAACGCTTTACGTCCAAATTCGAAGATTCTCATTACACAGGCAACGGCATCCGTCACATTGATCCCGCTAGAGACTTGGCCGACATCCAGTCTATCCTCAATGTTACTTCAACTGGAAGTCTCCTAGAAAGACTTACCGGCACTAGAGTGCCTTTGGAAAGTTCGGTCTTGACCCCTCCGGATACTGTTGGGAAGGACAGAGAACAAGAGGAGACACAAGATAACTTTGCTGCTGAGTTTAGACGAATGAAGCTCAGAGGTGAATTCCCTTGTCGATTATGCCCCGCCAAGTTTCCTAATCTTCGAGCTTTGAAAGGCCATAATAGAGTTCATCTTAGTGGAACCGGACCTGGCCCTTATCAGTGCAACATGTGCCCCCACGCGTCTCTAGACAAAGCAGCTTTGGTGAGACACATGAGAACCCACAACGGTGACCGACCTTACGAATGCGCCGTCTGCAACTACGCCTTCACTACCAAAGCCAACTGCGAACGGCATCTCAGGAATCGTCACGCGAAAGTCACTAGAGAAGACGTAAAGCGCTCGATCATCTACCATCCTTCAGAGGATCCTAACAATGATGAGGTCAACTCTAAGCTAGCTCGTGATGAAGTGAAGAGATCCTTAGCTTTTCAATCACCGCCCGAGTCCGACAGGCGCCCTGAACCCACCGGACGCGACACTCCTCTGTCTCACTTCACGCCTAGCTTCATCACCGATAGACACCCGGTCGCATCGTTAACTCCAAAACCTTTAGCAGACCTACCTATCATACCTAGAGACCCAGAGCCGCTAGCGCCTAGAATCAAAGTAAAAGGCATCGGACAGCTGAGGCAAATACCCGAATTTAGGCCGCCAGAGTTCCCCATTAAAAACAACGATGACGTTGACAACTATGATGAAGAGACGCCAGTGGATCTCAGCACCAACGACAACTGTGACGTTCTTGATCTTAGTAAAAAGAAGCGTGACGTAGAAGAAGATGTGGAACCTAAAACCAACTCTCGACCGGCGTTTGAACCTGATCCCGCCGCTGTCGCCGCGTCCACTTTCGAGAAGACTCAATTCCTTCTAGCACAGCAGAGACTCTTCGAGACTTCTCTCCCGAAAATCGATCCCTCTTACTACGCCACTCAGCTATCGCAACTGTACGCCTCCGTCCCAGGCTTACCAGGTCTGCCCGGCCTCCCGCCATCCTTTCCTATCAACCCCTACTTTCTTCAACCATCTTTTTTTCCCCACCCATCTGATTCCCAAGAGCTGGCCGAAATAAAGCAGCGTATCCAGAAGGAAATCATCCGTGGGCTGAGCATGTCTGGTGGTAGACTCGTGACTGGTGAGCAGGAACTCCAGCCTAAGCAGGAGCCGGAAGAAGAGGAACCAACTCGAGATAGCTCTCCAGTACCGCCTCCCCGCCCCGAATCTCCGCCTCGGCCGTTGAACAATTTGATCCAGCAGAATGACTCGGTAAAAATGGTGATCAAAAACGGCGTGCTAATGCCTAAGCAAAAACAGCGGCGCTACCGCACGGAACGACCGTTTTCATGCTCGCAATGTTCAGCTCGCTTCACTCTCCGCTCGAATATGGAGCGTCATGTCAAACAGCAGCACCCTCAGCACTGGAGCGTGCGGCGACCAGCCCCGCGAGCGCCTCCACCGTACCCATCACCAGATTCTCTAGCTGACCGAGTCAAGTTCGCGCTCTTAGCCCGTCACTTAGAACGACCGATCCAGCAAGATCGCTCGCCAATCCGTCGCGATTCCGACGAAGTTGCCGATAACGAGGAAGACGAAGATGACACCCTAGTTATAGACGAAGAGCCAGAACCTGAAGTTAAGACGGAGCATCGCGCCGCGCATTTGGTCGCTGAAGAAATCCTAATGGCCTCGCGGCAACAGGAGTTACATAAAGACTTTGATCTCAAGATTGCGGGGAATTTGATCAACAAGCCGATCTCCGAGAAGACTGAAGGCCCCCCGAAGGATATCCCGGTGCCTGTGGAGCCGCTGATGGTGCCGGTGGTGCCGACCAGGAGCGATGAGGAGGAGGACGAGGAGGGGCTGGTCGCGTCGACGAGCGAGGGAAACAACTCCGGGAGTGATGAAAACAAATCGGACGTGGACACGGGCGCCCAACCACCCAAGAAGAAATCCGCCTACAGCCTCGCCCCTAACCGCGTGTCATGCCCCTATTGCCACCGAAAATTCCCCTGGTCATCTTCCCTCCGTCGCCATGTCCTCACCCACACAGGGCAGAAGCCATTCAAATGCCCTCACTGCCCATTACTTTTCACTACCAAGTCTAATTGTGACCGTCATCTTTTGAGGAAACACGGAGGTTCAGCGAGAGCTATATTGACCGAGCCTATACCTCAGGCAGTATCACCGCCAAGCGATGTTAGAACCGTCCCAGAAAGACCGTTCAAATGCGCCTCATGTCCTACAAGCACGTTCTCCTCCCTAGAAACTCTAAAGAAACACATGTCTTCGCGACATGGAACTGGGGAATCCCAGCCACCATCACCAAACCCTGAAGATGAAACTACGAATGGGGACCTAGCGTTCAAATGCCATCTATGTGAGGGGTCGTTCGGTGATCGGGGAGGGGCCTTGAGGCACCTGGCGAGCGCGCACTCGGCGGAGTACGACCAGCTGGTCAGCAAGGGGGCGCTGGACGCGGCTAGTGATCGGAGTGAGAGCGCTGATGATGACGAGAAGGGGAAGATCCCGGATCATGCTAACAGAAAGGTGGTTTGCGCGTTCTGCGTGCGCCGCTTCTGGTCCGCAGAGGACTTACGCCGCCACATGCGCACCCACTCCGGCGAGCGGCCCTTCGCCTGCGACCTCTGCAGGAGGCGGTTCACCCTCAAACACAGTATGCTGCGACACAGGAAGAAGCATAGAGATGAAACTGATGATGAGGAGCCTACGCCGCCCGATACTCCTCAAACTTTAGGCAATGGATACAGCTACCACGACGAGGACGGTTCCGGCAACGAGATCCCGAGCAACGTGAACAACAATAACTCCCCACCCTCGCACTACGACAACAAACTTAAAATACAGATGACCTCCCGCAAATACTCGTCAGAAACTGAAAATGACACAGAAAATGGCGGCGATCTCATCGGGAAACTACTAGGGATCCCCGACAAAACTATCATCAACAAACTGCTCTCGTCCCCAGACGAAGCGGCCAAGTTTCTCGGAGTAAACAAATGA
Protein Sequence: MEDMRVEKQEPRVTRTTSIDSDNRSDRSEEDESRRARKRAASTSPSPMPLDKRFARFECPKCGQHFESGNACDLHRFTVHGDETRGFNDLTFVDFSSKKFPEIARGVCERNPHVSITEQRYRCEMCCRDFPCRQALDIHRKTCADPVSVQSPERIDRREDFFAKLDLRNRYGIPGTLTPPMERFTSKFEDSHYTGNGIRHIDPARDLADIQSILNVTSTGSLLERLTGTRVPLESSVLTPPDTVGKDREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFQSPPESDRRPEPTGRDTPLSHFTPSFITDRHPVASLTPKPLADLPIIPRDPEPLAPRIKVKGIGQLRQIPEFRPPEFPIKNNDDVDNYDEETPVDLSTNDNCDVLDLSKKKRDVEEDVEPKTNSRPAFEPDPAAVAASTFEKTQFLLAQQRLFETSLPKIDPSYYATQLSQLYASVPGLPGLPGLPPSFPINPYFLQPSFFPHPSDSQELAEIKQRIQKEIIRGLSMSGGRLVTGEQELQPKQEPEEEEPTRDSSPVPPPRPESPPRPLNNLIQQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSPDSLADRVKFALLARHLERPIQQDRSPIRRDSDEVADNEEDEDDTLVIDEEPEPEVKTEHRAAHLVAEEILMASRQQELHKDFDLKIAGNLINKPISEKTEGPPKDIPVPVEPLMVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSDVDTGAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILTEPIPQAVSPPSDVRTVPERPFKCASCPTSTFSSLETLKKHMSSRHGTGESQPPSPNPEDETTNGDLAFKCHLCEGSFGDRGGALRHLASAHSAEYDQLVSKGALDAASDRSESADDDEKGKIPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDETDDEEPTPPDTPQTLGNGYSYHDEDGSGNEIPSNVNNNNSPPSHYDNKLKIQMTSRKYSSETENDTENGGDLIGKLLGIPDKTIINKLLSSPDEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410913;
90% Identity: iTF_00773242;
80% Identity: -