Basic Information

Insect: Cydia strobilella
Gene Symbol: Zfa
Assembly: GCA_947568885.1
Location: OX387701.1:6716292-6724569[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.5 31 5.9 2.2 1 23 229 252 229 252 0.97

2 11 6.4e-06 0.0004 21.3 2.7 1 23 259 281 259 281 0.99

3 11 3.7 2.3e+02 3.2 4.3 2 23 286 307 286 307 0.95

4 11 0.6 37 5.6 2.3 2 23 312 334 311 334 0.94

5 11 0.0046 0.28 12.3 1.5 1 23 337 359 337 359 0.97

6 11 0.00011 0.007 17.3 2.0 1 23 362 385 362 385 0.97

7 11 0.0076 0.47 11.6 0.7 2 22 394 414 393 418 0.92

8 11 0.00043 0.026 15.5 1.9 1 23 431 454 431 454 0.97

9 11 0.62 39 5.6 4.3 1 23 460 483 460 483 0.92

10 11 6e-05 0.0037 18.2 0.2 3 23 494 514 493 514 0.99

11 11 0.00029 0.018 16.1 1.6 1 23 520 543 520 543 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.5	31	5.9	2.2	1	23	229	252	229	252	0.97
2	11	6.4e-06	0.0004	21.3	2.7	1	23	259	281	259	281	0.99
3	11	3.7	2.3e+02	3.2	4.3	2	23	286	307	286	307	0.95
4	11	0.6	37	5.6	2.3	2	23	312	334	311	334	0.94
5	11	0.0046	0.28	12.3	1.5	1	23	337	359	337	359	0.97
6	11	0.00011	0.007	17.3	2.0	1	23	362	385	362	385	0.97
7	11	0.0076	0.47	11.6	0.7	2	22	394	414	393	418	0.92
8	11	0.00043	0.026	15.5	1.9	1	23	431	454	431	454	0.97
9	11	0.62	39	5.6	4.3	1	23	460	483	460	483	0.92
10	11	6e-05	0.0037	18.2	0.2	3	23	494	514	493	514	0.99
11	11	0.00029	0.018	16.1	1.6	1	23	520	543	520	543	0.96

Sequence Information

Coding Sequence: ATGGATAAGATCGGAATCAAAAATGAATTCTTTCCGCACTACGGCACAATACCTTATTGCCACGCATGTTTAAGTTCAGACAGAGTTCTTTCAACTGTGACCGAATATGGCGATATCTATTACAAAATCTTGGATAATCAGAACATGATGCTTCGAAATGATCTGAACTTATGCTGGGAATGTATAGCAATTCTAAAGAAAATCAGGATGTTCAAGAAGAAGATTGTAGAAGCCCAGAAGATACTTCAATTTTATTACACTAATAAACAGGTTCCCTTTCCCCACCCTCTTTCAAATCTTACCCCCCACACCATTAACCACCAGATATGTTTAACATATGAAGAGAATGAAATAAAAGCTATCAAAGAAGAGATTGATGTTTACAATGAATTTGACCACTTTGATAATGACAATATCAAAGACGAACCTGAACCCAATGAGCCAAATGTCTTGGATAATGTTACGGTCTTGGATAATGTTACGGAAACTGTTCCGGAGACATCAAACGATTGGAAGGAATTTAACATGAGGAGAATAATGAATAGGAAAGCGAAGTATAGATTTTTGAATGCTAAACTGAGGAAACATAGAAAATTGTTAGTCAGGAAGATGCCGATAGAGCTTGGTGCTGTTTTGAATGGCTTGGAAGCGGAGAGGGGTGATGTATCGTTTTTAAACGAGGAGTATAAATGTGCGAGTTGTGTCGCAATGTGCCATGATGAGGATGGGTTGGCTAAACATCAGAAGAAGTATCATGAGGAGGCAATTGGACCATACCAATGCAAAATATGCAAGACCCGCTGCCCATCCCAGGACAATCTTCAAGCACACCAGATGAAGCACTATTACCAGAGGGAATGCAAGGTGTGCCGGCTGCGGTGTTGCTCGCAGCCCTACATGGATAGACATCTCGAGCAGCATGACCGGATGGTGCAATGTTTATCCTGCGAACTGTGTTTCAAGAACGTGCGGTTATTCTACAACCACTACAAGGAGTTACACGCGAAGTTCGTCTGCGATGTTTGCGGTAAGCGATGCAAGTCGCGCGCCATTATTGAGAAACATCTTAGGTACCACTTCGGTTACGAATGCCCGTACTGCAAAAAGAAGCTGAAGAACTCCACGTCATACAAGAACCATGTAGAAACGCAGCACACATCTTCCGTCTCAGACAACTCGTACTGCGTGCAGTGCGACAGGAGATTCACGAGCGACCGCATGTACAAGCGGCACTTGCAGAGCAGCGCGGCGCACGCGGCAGAGCGAGACAACACTAGGGCCAAGCGAAAGTACCCCTGCCCCGAGTGTAACAACGTGTATTCAAGGCGCACGTACATGAACAACCACTATCGACATGTCCACGCCAAGCAGAGCAAGTACTACTGCGAGGACTGCGACCGGCATTTCCTGAATCGAACGAGGTACCTGGACCACAGACGGTTCCAGCACGACGGCGCGAAGAGAGACAAAGACAAACTGTGCAATATATGCGGCCGAGGGTTTGCGGCAAACAGAACGCTAGTGAACCACATCCGGACGCACTCCGGCGAGCGTCCGTTCTCGTGCGAGTATTGCGGCGCCAAGTTCACGCAGAAACACGCCATGCTGTCACACGTCAAGTATATACACCTGAAGAGCAAGCGGAAAGCTAGCTGGCACGAGTAG
Protein Sequence: MDKIGIKNEFFPHYGTIPYCHACLSSDRVLSTVTEYGDIYYKILDNQNMMLRNDLNLCWECIAILKKIRMFKKKIVEAQKILQFYYTNKQVPFPHPLSNLTPHTINHQICLTYEENEIKAIKEEIDVYNEFDHFDNDNIKDEPEPNEPNVLDNVTVLDNVTETVPETSNDWKEFNMRRIMNRKAKYRFLNAKLRKHRKLLVRKMPIELGAVLNGLEAERGDVSFLNEEYKCASCVAMCHDEDGLAKHQKKYHEEAIGPYQCKICKTRCPSQDNLQAHQMKHYYQRECKVCRLRCCSQPYMDRHLEQHDRMVQCLSCELCFKNVRLFYNHYKELHAKFVCDVCGKRCKSRAIIEKHLRYHFGYECPYCKKKLKNSTSYKNHVETQHTSSVSDNSYCVQCDRRFTSDRMYKRHLQSSAAHAAERDNTRAKRKYPCPECNNVYSRRTYMNNHYRHVHAKQSKYYCEDCDRHFLNRTRYLDHRRFQHDGAKRDKDKLCNICGRGFAANRTLVNHIRTHSGERPFSCEYCGAKFTQKHAMLSHVKYIHLKSKRKASWHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410873;
90% Identity: -
80% Identity: -