Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:6783658-6799373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.078 4.8 8.4 0.3 1 23 360 383 360 383 0.98

2 11 3.5 2.2e+02 3.2 0.3 8 23 396 411 391 411 0.92

3 11 0.15 9.4 7.5 0.1 1 23 415 438 415 438 0.94

4 11 1.7 1.1e+02 4.2 4.8 1 23 444 466 444 466 0.96

5 11 0.00055 0.034 15.2 0.8 2 23 471 493 471 493 0.94

6 11 0.0046 0.29 12.3 1.0 1 23 500 523 500 523 0.97

7 11 0.025 1.5 10.0 2.2 1 22 534 555 534 559 0.93

8 11 0.0013 0.083 14.0 0.3 1 23 567 590 567 590 0.93

9 11 1.8e-06 0.00011 23.0 0.6 1 23 596 619 596 619 0.96

10 11 0.00014 0.0087 17.1 0.2 3 23 630 650 629 650 0.98

11 11 0.018 1.1 10.4 0.8 2 23 657 679 656 679 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.078	4.8	8.4	0.3	1	23	360	383	360	383	0.98
2	11	3.5	2.2e+02	3.2	0.3	8	23	396	411	391	411	0.92
3	11	0.15	9.4	7.5	0.1	1	23	415	438	415	438	0.94
4	11	1.7	1.1e+02	4.2	4.8	1	23	444	466	444	466	0.96
5	11	0.00055	0.034	15.2	0.8	2	23	471	493	471	493	0.94
6	11	0.0046	0.29	12.3	1.0	1	23	500	523	500	523	0.97
7	11	0.025	1.5	10.0	2.2	1	22	534	555	534	559	0.93
8	11	0.0013	0.083	14.0	0.3	1	23	567	590	567	590	0.93
9	11	1.8e-06	0.00011	23.0	0.6	1	23	596	619	596	619	0.96
10	11	0.00014	0.0087	17.1	0.2	3	23	630	650	629	650	0.98
11	11	0.018	1.1	10.4	0.8	2	23	657	679	656	679	0.92

Sequence Information

Coding Sequence: ATGCCAGGGTTTAGCGGAGTTCAAAATTCCTCGAGATCTACAACAGTATTAAACACCTGCATTTGTTGTTTGGCAGTAAATATTCCGCTTGTGAAATTAACAAATTGTAAACACGTAGAGTTTTTTGAGTATATCCTTGAGGTTAAGTTAGAGTATCTAGCAACGTTTGTCTGCTATGCATGTCATGGCACGCTCAAGGATATTTACCAGTTCAAGAGACAAGTGGAAGATAGTCTCTCAAATCTTAAAAAACAGGTTAAAAACTTAAATCGGAACAGCACAAAACTTTCTAAACTCACACAAGCTGATATAGAAATATTCCACACTCAGAACTCACAGCCCCTTGAAAAGGAGGTCATCAAAATAAAAACCGAAACTGAAATCGAAATTGAACTCGAACAAGAATGCTCTGATCCCGAGAATCCATTATCGGTGATTAAAGAGAAGGATAAAGGTCCTAAAACTCCATTCTTCGTAAATCGGAATCCCGAGAATGATATCCCACTATGCGTGATTAATGAAAAAGATAAAAATCCTAATACTCCATTCTTCTCAAATATGCATCCGGAGCTTGTCCCATTGCCGCCTAAAGATCCCAGTATTTCATTCTTCTCACATAGGGATCCGGAGATTGTCCCATTACCGCTTAAAGATCCCAATATTTCATTCTTCTCACATATGTATCCGGAGATTGTCCCATTACCTGTGATTAAAGAGCCTAAAGATCCTAATATTTTATTCTTCTTACATAGGGATCCGAAGAATGTCCCAGCACCGGTGATAAAAGAGAAACATAAAGATCCTAATATTTCATTCTTCTCACATAGGGATCTGGTGACCGATGATCCATTATGGGTGAGGGCTCCGGAGAATGGTGTCCCATTACAGGGGATTAAAGAAAACAATGCAGATCCTAATGTTTCATTACCGGAGATTAATGAAAAAGATAGAGATCGTTATACTGCATTGTTTGAACGTAAATATCAAGGGAAGTTTAAATTAGTGGATATAAACGAGGAAGAAATGTGGGAGGAGAGGAGAAAAGAAGCGGCAAAAGAAAAGTATTTGAAATTGCCGTACAAATGTGAGAGTTGTGTCCGTGGGTTTGCCCTTGAGCAGAGATTGGAAGAACATATGACAACGaaacatactgagACAAGCGGAAGTGTCCCGTGTGTGATATGTAAGGTGTTCCATTCCGCGGCAGCTTTAGAGCTGCACACGAAACGGCACTATAGGAGGTTCGACTGTGGCGTGTGCGGAGCGCGCTACATTACAATGACCGCCGTGAAGGCTCATTACGACAAGATGCATGAGACTTCACCTATACACAAGTGCGAGGAATGTGGATATACTGCAACTTGCTACCGCGGCTTGCGCCGTCATAATCAGAGACACAAGGGCAAAGCGAGCTGCGAGCAATGTGGGAAACAATTTGTCAGCAAGTTGAGCCTCAGAGAccacgtgaaGTTATTCCACGAAGCCTCAAACCGCTCGTACACCTGCACGGTATGCTCCAAAGTGTACCGGGCCAGCACCCGCTTCCTATATCACATGAAGATCGCACACGGCCCGCCCGCGCCCGCAACCGACAGCTGGTTCTACTGCAAGCCGTGCGGCAAGGACTTTCGCTCGAAACAGGGCTTCAATTACCACCTGAAGATGTCCAAGAATCATGCCAATGAAAATGATAAAAAATTCGTATGTAGCGAGTGCGACGCGCGCTTCTTTACAAAGCAGAAGCTGCAAGAACACGTCGAGTGGGAGCACCGCAAAAACTACCAGCACAAGTGCGACGAGTGCGATAAAGTATTCAAAAACATTAGTGCGCTGAACATACACATAAAACAGGTTCACGAGAAAAAAACACTACCCCGGAATAAGATATGCGATCACTGCGGCCAAGCGTTTACGGCGACGGGGCTCTTGCTCGTACACATCCGCACGCACACCGGCGAGCGGCCGCTCTCGTGCGCGCACTGCCCGGCCACCTTCGCGCACCCCGCCGCGCTTTACACGCACAACAAGTTAAAGCACAAACAGAAGAAAACGTTGACTTGA
Protein Sequence: MPGFSGVQNSSRSTTVLNTCICCLAVNIPLVKLTNCKHVEFFEYILEVKLEYLATFVCYACHGTLKDIYQFKRQVEDSLSNLKKQVKNLNRNSTKLSKLTQADIEIFHTQNSQPLEKEVIKIKTETEIEIELEQECSDPENPLSVIKEKDKGPKTPFFVNRNPENDIPLCVINEKDKNPNTPFFSNMHPELVPLPPKDPSISFFSHRDPEIVPLPLKDPNISFFSHMYPEIVPLPVIKEPKDPNILFFLHRDPKNVPAPVIKEKHKDPNISFFSHRDLVTDDPLWVRAPENGVPLQGIKENNADPNVSLPEINEKDRDRYTALFERKYQGKFKLVDINEEEMWEERRKEAAKEKYLKLPYKCESCVRGFALEQRLEEHMTTKHTETSGSVPCVICKVFHSAAALELHTKRHYRRFDCGVCGARYITMTAVKAHYDKMHETSPIHKCEECGYTATCYRGLRRHNQRHKGKASCEQCGKQFVSKLSLRDHVKLFHEASNRSYTCTVCSKVYRASTRFLYHMKIAHGPPAPATDSWFYCKPCGKDFRSKQGFNYHLKMSKNHANENDKKFVCSECDARFFTKQKLQEHVEWEHRKNYQHKCDECDKVFKNISALNIHIKQVHEKKTLPRNKICDHCGQAFTATGLLLVHIRTHTGERPLSCAHCPATFAHPAALYTHNKLKHKQKKTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -