Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387684.1:1078725-1111605[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0073 0.45 11.6 0.4 1 23 1555 1577 1555 1577 0.97

2 10 0.0073 0.45 11.6 0.4 1 23 1619 1641 1619 1641 0.97

3 10 0.0073 0.45 11.6 0.4 1 23 1683 1705 1683 1705 0.97

4 10 0.0073 0.45 11.6 0.4 1 23 1747 1769 1747 1769 0.97

5 10 0.0073 0.45 11.6 0.4 1 23 1811 1833 1811 1833 0.97

6 10 0.0073 0.45 11.6 0.4 1 23 1875 1897 1875 1897 0.97

7 10 0.0073 0.45 11.6 0.4 1 23 1939 1961 1939 1961 0.97

8 10 0.0019 0.12 13.5 0.3 1 23 1967 1989 1967 1989 0.95

9 10 0.0003 0.019 16.0 1.1 1 23 1995 2017 1995 2017 0.96

10 10 8.8e-08 5.5e-06 27.1 1.9 2 23 2024 2045 2024 2045 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0073	0.45	11.6	0.4	1	23	1555	1577	1555	1577	0.97
2	10	0.0073	0.45	11.6	0.4	1	23	1619	1641	1619	1641	0.97
3	10	0.0073	0.45	11.6	0.4	1	23	1683	1705	1683	1705	0.97
4	10	0.0073	0.45	11.6	0.4	1	23	1747	1769	1747	1769	0.97
5	10	0.0073	0.45	11.6	0.4	1	23	1811	1833	1811	1833	0.97
6	10	0.0073	0.45	11.6	0.4	1	23	1875	1897	1875	1897	0.97
7	10	0.0073	0.45	11.6	0.4	1	23	1939	1961	1939	1961	0.97
8	10	0.0019	0.12	13.5	0.3	1	23	1967	1989	1967	1989	0.95
9	10	0.0003	0.019	16.0	1.1	1	23	1995	2017	1995	2017	0.96
10	10	8.8e-08	5.5e-06	27.1	1.9	2	23	2024	2045	2024	2045	0.97

Sequence Information

Coding Sequence: ATGGTCACGTTTTTTCATTTGTGGCAGACTACTTTCGCACTCATGCGGTACTATATTGTACCGTTAGTCGCGGCGCGTGGCCGCGAGAGTGCCGCTGCCGTCGACAGAGTGCCGGACGCAGCAAGCAACCCCTCCTCTCGCGATTTCCTGGCGGTGGAGGAAGGAGTCGGGAGCGGGAGTGATTTTGTGTTCGGAGGTACATGGAGGGGATCCCGCACCTTGGTGGGGATGCGTCGCGTGCGTGGTGGGCACTCGCCCGGCGGCAAGGATGACGAAGACTCGGAGATGAATTTCGCAGCATTCTCCACAGCGAATGCTGCGGGCACACACTTTGTGACCACAACCGGGCAGCTACCAGTTACTAAGCTACAGCAAAATGTCGCCAGCAATGGAAGCACTCTGCAACAAATGGTGGGCATGGTGGGCACGGACGGCGGCGTGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGCATGTGACACACGGCAGCAGTACGTGCGCGCGGACGGGCTGCAGGCCGCGCCGCAGCTCATCACGCTGCCCATCTCCCTGCCCGGAGCCAAGCCGGGCGACCCGCAGCAAACTGTCCAGATCCAAGTGCTGAGCCCCAACATCCTCCAGCAGCAGCAGCCCAAGTACCAGATGCAGATCCCCATCCAGGGCTTCCAACAAGGCGGCGCGGTGCTGACGGTGGCGTACTCGCCGGACAACAACGACGCGGGCATACAGCTGCTCGGCAACACGCTGCCTGAAGGGCTGCAGATGCTGGCGGCGCTGCCTCAAGACATGCAGCTGGTCCAACAGATGCAGGACAACAAGGAGCAACTCCAGCAGACCATCCAACACCAGGTGTTCATAACACCGAACCAGCAGATAGTGATCAACGGCCCCGAGGACACCAAGCTGAACAACAACAACACCATCACCAACAACAACCAGGGCGTCACCAACATCGTCATCAAGGAGGAGTGCGACGACAACGCTAACGATGACGAGAGCTCGCAGGGCACGGAGTCGAGTGAGAACTTGCAGTGGCAGATAACCAGCTCGCAGCAGGACCTCATCAAGTACTTCAACCAGTTCCAACCACAGCAACCTTCGCTGCCGGTGTCGCTGCAGCAGTTCCTCCGCATCAACCCCTCGGACACCAAGAAGGAGACGACAGTCGAGATCGAGGTGCTGCCCATGGACCAGGACAAGGAGCCCATGGCCGAGGCCGTCGTCGGAGAAGACGGCTCCCTAAGAATACAGCCGAAAAAGAAGAAAAAGTACAAAAAGAAACCGCCAAAGCCGTCGCGGCCGAAGCCGGGGCAGGTCGTGATCGCCAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGGTGAGTCATCACTAGGGAACAACGCGGCCGACGGCTCGCCCATCTACTGCTGCCCGCAGTGCCAGATGGCCTACCCCGAGAAGGAGCAGCTCGAGATGCATCTCTCCGTGCACGAGATCGAGAGGCGGTTCATCTGTGGCATCTGTGGGGCCGGTTTGAAGCGCAAGGAGCACTTGGAGCGCCACAAGCTGGGCCACAACCCGGAGCGGCCGTACGTGTGCGGCGTGTGCCGCAAGGGCTTCAAGCGCCGCGAGCACCTCAACCTGCACACCGTCATACACTCCGGGGTCAAGACCGAGGTCTGCCCCGAGTGCGGGAAAGGTTTCTACCGCAAGGACCACCTGCGCAAGCACATGCGCTCGCACGAGAGCAAGCGCTTGCGCGACGACGCGGCCGACGGGGGCGGGGGGGCGGTGGGGGGGAGGGTCTCCACTCCCACCCCCGCACCCGCACCCTGCGCCTCCCCCTCCCCCTCCCCCAGCAACACCATCCTGCCCGAAATCACTATACACGTGCCGACGAGCTCGAGCATGCAGTCGGTGCAGATCAACATCCCGCAGCACGTCGTGACCTCGCTGCAGGCGCAGGCCGCCCGCGACACGCACCAGCACCAGCACCAGCACCAGCAGCTCGACGCGCTGTTAGCGCAGGCGCATGCGCACCAGCACCAGCACACGTGA
Protein Sequence: MVTFFHLWQTTFALMRYYIVPLVAARGRESAAAVDRVPDAASNPSSRDFLAVEEGVGSGSDFVFGGTWRGSRTLVGMRRVRGGHSPGGKDDEDSEMNFAAFSTANAAGTHFVTTTGQLPVTKLQQNVASNGSTLQQMVGMVGTDGGVQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPACDTRQQYVRADGLQAAPQLITLPISLPGAKPGDPQQTVQIQVLSPNILQQQQPKYQMQIPIQGFQQGGAVLTVAYSPDNNDAGIQLLGNTLPEGLQMLAALPQDMQLVQQMQDNKEQLQQTIQHQVFITPNQQIVINGPEDTKLNNNNTITNNNQGVTNIVIKEECDDNANDDESSQGTESSENLQWQITSSQQDLIKYFNQFQPQQPSLPVSLQQFLRINPSDTKKETTVEIEVLPMDQDKEPMAEAVVGEDGSLRIQPKKKKKYKKKPPKPSRPKPGQVVIANAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGSRGGSSVASVGPGESSLGNNAADGSPIYCCPQCQMAYPEKEQLEMHLSVHEIERRFICGICGAGLKRKEHLERHKLGHNPERPYVCGVCRKGFKRREHLNLHTVIHSGVKTEVCPECGKGFYRKDHLRKHMRSHESKRLRDDAADGGGGAVGGRVSTPTPAPAPCASPSPSPSNTILPEITIHVPTSSSMQSVQINIPQHVVTSLQAQAARDTHQHQHQHQQLDALLAQAHAHQHQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -