Cstr023132.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:813169-833750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0056 0.35 12.0 0.8 1 23 304 326 304 326 0.96 2 20 1.8 1.1e+02 4.1 2.2 1 23 333 355 333 355 0.94 3 20 1.1 67 4.8 4.9 1 23 359 381 359 381 0.96 4 20 3.2e-05 0.002 19.1 2.6 1 23 386 409 386 409 0.96 5 20 0.0028 0.17 13.0 0.1 2 23 415 437 414 437 0.94 6 20 0.48 29 5.9 0.1 1 21 448 468 448 473 0.92 7 20 0.059 3.7 8.8 0.1 3 23 479 500 478 500 0.91 8 20 0.00059 0.036 15.1 2.2 1 23 505 528 505 528 0.98 9 20 0.9 56 5.1 0.1 1 13 548 560 548 561 0.90 10 20 0.9 56 5.1 0.1 1 13 622 634 622 635 0.90 11 20 0.22 14 7.0 0.0 1 19 696 714 696 717 0.88 12 20 4.6 2.8e+02 2.9 0.4 1 11 723 733 723 737 0.86 13 20 4.6 2.8e+02 2.9 0.4 1 11 773 783 773 787 0.86 14 20 0.9 56 5.1 0.1 1 13 823 835 823 836 0.90 15 20 4.6 2.8e+02 2.9 0.4 1 11 897 907 897 911 0.86 16 20 0.22 14 7.0 0.0 1 19 947 965 947 968 0.88 17 20 0.00033 0.02 15.9 0.3 1 23 974 996 974 996 0.97 18 20 0.00032 0.02 15.9 1.6 1 23 1004 1026 1004 1026 0.98 19 20 1.4e-05 0.00088 20.2 1.0 1 23 1032 1055 1032 1055 0.96 20 20 0.00039 0.024 15.7 0.2 2 23 1063 1085 1062 1085 0.93
Sequence Information
- Coding Sequence
- ATGAATGTACAAAATGTTGCCTCAAATGAGGATTCCTTGCTGGCTTGTCGAGCTTGTCTGGTTACTGACTGTAAACTGTACAACATACACGATTATCAACTCGGTGGTGCCTTTGCTCGCATTTCAGGAGTTCCTGTACACAAAGACGGGCTCCCGCAGCATCTCTGCATCTTCTGCAGCGCGCAGGTGGCCCGCTTCGAAGCCTTTCGAGAAAAGGTCCTCCGCTCACACTTTTGTATGAGGGCGAAACTATGCGAGAGAGAGTTGGATACAAACATTATCCGCACCATTGACCGCGCTCACTTCAAGCTCCTAAACAACCTGGCCTTCACCAAACCACAGCCGGTCGAATGCGTAAACCTTAAAACCCCTGAAGATATCAAAAACGAACCCATTCCAGACACAGACGACACTAAAGATAATATTGTCGAGAAACAAGATCTGAAAGAGGAAGAAAATAATGATACAGAACTTGATAATGATGATGGAGTCGAAGATATATTCATACTCACAGATGTCGAGAACATTAAAAAGCGAAAGAGAAGAGTTACAGCTAAGAAAAAGATGAAACTTGAAAAGTTTGATGATGACGATGACATCAAACTTGTGAATTTTGCTAAAAAAAGACCGAATAGGAAAAAAGAGAGTAATCAAAAGAAAACTGTTGTTAGAAAGAGAGAATTAAAAACTAAAAATGCTGATGATAATCCAAAACCAAAAGTGAAGAAAGAAAGGAAGAAGGAAGACAGTAAGAGGAAGTTTAGGAATCCGGAAAATGGTTACATGCCGGTGTTTGATTTTGCTACATTTGAGAATGCTTGTGAAGTGCGTGTTGTCACTTTGAGTAAGGAAGATCAACTGGAGGAGATTGCGACGCGCAAAGAGTCCGCCAATTACTTGGAGTCCCCGTTCCAGTGTCACGACTGCGGAAAAGGGTTCCTGGCCGAGGAGGCTTATAACAACCATCAGTTGCGGCACAGCCCGAGCGCGGGCCCATATGCCTGCGAAATTTGCAAAGTCCGCTTCAACATGCAGTGCCGTCGGCAGGAGCACCAGGACATGCACCGCCTCAAGTTCTTCTGCAAGAACTGCAGTTTCGTCTCTAGAAACAGGCATCAAGCGAGGAGACATTACGATATGCACGCCGGCAAAACCTTCGAGTGCAAACACTGTGGGAAGATGTTCAATAAGAGTTCAACGTATCTGTCGCACGTGCGGCTGGCGCATCCAGACATGCACGTGTCGTGCGACCTGTGTGGCGAGACCTTTGTGGGGCAAGCGGGCCTCAAACAGCATAAGGCGAAGATGCACTCCATCGCCGAGAACATAAAACCACAGAAGTTTGAGTGTGGCACGTGCTCAGCCACCTTCCTAAGTGTCTCGGCGCTGAACAGACACACGGACACGGCCGGCGAGCACACAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACAGGAACATGTCACAGAGACACATCCGAAGGAAACGTATCGGTGTGAGGAGTGCAACATGTCGTTCAAACGCGCTGCGGCGTACGACCTGCACCACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACCTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACCTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGTGCAACACCGACATGTACCTACACACGACCTGCACACCGCCGCAAGCACCTCGGGCAGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCTTCAGCGCCGCGGGCCGCCACGTGGTGCGCCGCACGCCCGGCCACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGTCCCGCCAAGGGCTGCGCTACCACCTGCGGGACCACAAGGGCCTCAACCTGAAGCTGTTCACGTGCCCCGAGTGCAACAAGACCTTCGCCGCAAAGCACATGAGAGATTGGCACATGCGGTCGCACACGGGGGAGAAACCATACCAGTGCCCCGAGTGCCCGCTCGCGTTCAGCCTCAACAGCAACTTTAAGCGTCACCACAAGGCGGTACACCTCGGGCAGCGTAAAAGCATCCCTTGCAACATCTGCGGGCGCGTGTTCACGACCACGTCGTGCGTGCGCGTGCACGTGAACGCCGTGCACCGCGGCATGCCGTGGCCCAAGCGGAACCGGGACCGCGCCAGGGGCAAGGCCGAACCCAAGTCGCCGCTTAACAATAAATAA
- Protein Sequence
- MNVQNVASNEDSLLACRACLVTDCKLYNIHDYQLGGAFARISGVPVHKDGLPQHLCIFCSAQVARFEAFREKVLRSHFCMRAKLCERELDTNIIRTIDRAHFKLLNNLAFTKPQPVECVNLKTPEDIKNEPIPDTDDTKDNIVEKQDLKEEENNDTELDNDDGVEDIFILTDVENIKKRKRRVTAKKKMKLEKFDDDDDIKLVNFAKKRPNRKKESNQKKTVVRKRELKTKNADDNPKPKVKKERKKEDSKRKFRNPENGYMPVFDFATFENACEVRVVTLSKEDQLEEIATRKESANYLESPFQCHDCGKGFLAEEAYNNHQLRHSPSAGPYACEICKVRFNMQCRRQEHQDMHRLKFFCKNCSFVSRNRHQARRHYDMHAGKTFECKHCGKMFNKSSTYLSHVRLAHPDMHVSCDLCGETFVGQAGLKQHKAKMHSIAENIKPQKFECGTCSATFLSVSALNRHTDTAGEHTDLRPCEQCGENCASEDALQEHVTETHPKETYRCEECNMSFKRAAAYDLHHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTRRGPPRGAPHARPLRVRAVRPRAHGECVCNTDMYLHTTAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTRRGPPRGAPHARPLRVRAVRPRAHGECVCNTDMYLHTTAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCATPTCTYTRPAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCATPTCTYTRPAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTRRGPPRGAPHARPLRVRAVRPRAHGECVCNTDMYLHTTAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTVSVCATPTCTYTRPAHRRKHLGQRFSAAGRHVVRRTPGHFVCEQCGRVLTRFSAAGRHVVRRTPGHFVCEQCGRVLTSRQGLRYHLRDHKGLNLKLFTCPECNKTFAAKHMRDWHMRSHTGEKPYQCPECPLAFSLNSNFKRHHKAVHLGQRKSIPCNICGRVFTTTSCVRVHVNAVHRGMPWPKRNRDRARGKAEPKSPLNNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -