Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387695.1:6101238-6116788[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.1e-05 0.0013 19.6 0.9 1 23 253 275 253 275 0.99

2 11 0.043 2.7 9.2 2.1 1 23 283 306 283 306 0.90

3 11 0.67 41 5.5 0.3 1 23 310 333 310 333 0.87

4 11 0.0044 0.27 12.4 2.1 1 23 408 430 408 430 0.99

5 11 0.0025 0.15 13.1 3.1 1 23 438 461 438 461 0.97

6 11 1.1 67 4.8 5.0 1 23 465 487 465 487 0.98

7 11 6.9e-05 0.0043 18.0 2.5 1 23 492 515 492 515 0.98

8 11 0.78 48 5.3 1.7 3 21 521 539 520 542 0.80

9 11 3.9e-06 0.00024 22.0 1.2 1 23 662 684 662 684 0.98

10 11 6e-05 0.0037 18.2 0.8 1 23 690 712 690 712 0.97

11 11 2.8e-05 0.0017 19.3 2.7 1 23 718 741 718 741 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.1e-05	0.0013	19.6	0.9	1	23	253	275	253	275	0.99
2	11	0.043	2.7	9.2	2.1	1	23	283	306	283	306	0.90
3	11	0.67	41	5.5	0.3	1	23	310	333	310	333	0.87
4	11	0.0044	0.27	12.4	2.1	1	23	408	430	408	430	0.99
5	11	0.0025	0.15	13.1	3.1	1	23	438	461	438	461	0.97
6	11	1.1	67	4.8	5.0	1	23	465	487	465	487	0.98
7	11	6.9e-05	0.0043	18.0	2.5	1	23	492	515	492	515	0.98
8	11	0.78	48	5.3	1.7	3	21	521	539	520	542	0.80
9	11	3.9e-06	0.00024	22.0	1.2	1	23	662	684	662	684	0.98
10	11	6e-05	0.0037	18.2	0.8	1	23	690	712	690	712	0.97
11	11	2.8e-05	0.0017	19.3	2.7	1	23	718	741	718	741	0.98

Sequence Information

Coding Sequence: ATGTACGACTTGAAAGCTTGTACAGTTTGTTTTAGTACAAATGTTAACCTTTACAACATGGACTCTGGCACGTTACGCCAGGAATTCAACTTGATATCTGGCCTGAAGACTGACTGCTCTGGTTTGCCCAAATATCTGTGTGTGGAGTGTTCAGCATATGTGAAACGATTTGTAAAGTTTCGTAAAAAATGCCAGCGAGCCCATTTTACGTTGCGTGAACTCCAGCAAAGGAATAAAGAGATCAGCATACATAAACTGGAGGCTATAGATAGGGAATGCTTAGACCTAAAACCTACACTATCGTACATAGATATAAATAGGACAAATTACGAAGAAGCATACTCCCAATGGACCAGAACTAGCCGACTAGGAATATACTACGGTGACATAATACCAATCATCCACCACAGTACATACACCACCCAAGTTATACATATGCCGAAAAAACAAGAAACGATACAGCTAGATGTTAAAGTGGAGGAAGAGCCGCAACCAAGTATAGCGCACCAACATTTAGAACAACCAATATCAATTGTTAAAGATGATGATGATTACTTTGATAATAATGATAATATTAGTGATCAACATTCCGACGAAGAGCCCCTGCCCCCGCCCGCTAAAAAACCTAAAGGAAAGGCTAAGAATTTAGAACCGGAAAGCTCAAGTCTGGATGAAGAGTATGCCAGTATGGTAGCTATAACAGACAAGGAGGCGCAGGCAGCAGTGGATGTGTACAGGCTATTTAGTCACGGGACGTTCAGGTGCGAGGTGTGCAATAAGGGATATAATACTCAGCAGAGGCTGACTGCTCATTTAAGGATGCATGATCAGCATGTTAGTGGAAATTTCCTCTGTAACTTGTGTAACTACTATTACAAGACAGAGTATCTTTTGAAGACTCACACGACTGAGAAGCACATGTACAAGTATGAGTGTAAGAAGTGTAATGAAGTCAGTTTTGACAGATTGTCAGCTAAGCAACACTACATATGGGCTCATCTCCAGCGAGGCAGGAAGAAAGACGCCAACTGGTACGAGTCGCGGCCCAAATGGCTGAGCCCCAAGGGCGGCAAGCGGGTTAAGGGCGTCGTCACTATCCGACCTGTCAGGAAAATCAACAAACTACCCCCCGACTTCCCTATGTACTCTCCCGTGAAACACGAAGAGCAATACGAGTTGATATTGGACCGCAAAACCTCCAGGAACTACTTAGAGGCCGAGTACAAATGCGAGCTGTGTTATAGAGGCTTCAGAGCGGTTAATACGTACAGCAAGCACATGAGGAAACATGACCCGGCCTACGCGGGAGCATACTCCTGCGATATGTGTAAGCTACACTTCAAATCGCCCCGCAAAGTGTACCGGCATATGAACATTACGCACCTCTTCAAATACTCCTGTCAGATCTGCAAGTTCGTCTGCTTCAACAAGGGTCAAGCGCATATGCACTATCGTTGGCATAAAAATGTCACGTACCAATGTCCGCATTGCGAAAAAGAATTCAAAAAAGCGTCAACTCGCTTGACTCACATCAGGATAAAGCACCCGTCCACTAACATTTGCAACATGTGTGGTCATAGCTTCGTGAGTGAAAACGGCCTGTATTGCCACAAACAACTGGCACATAGTACTGAGGAGCGGGACGTAATGAACGCAAGCATAGCCAACCCACAAGACCCGTTATTCTGTGCTGATTGCAACGTACAGTTCCTCAACGAAGCGGCCTTTGCCACACATCTGGGCAGCTCTAACAAACACGCCACCACTAATTTGTCGATAGTGAAGCCGAGCCGCCGCCCGGGCGGCGCGGAGGGCGCCCGGAGGCGCGGGCGGCCGCGCTCGGCCATACTCAAGTCGGAGGTGCTCAACAATGGAACCGTTACCTCTACCAGCTGCGATTTGTGTGGTGAACATATGGCCAACGACGTGCAAGCGCGGAAGCATTACGCGGAGCAACATCCGGGGGCAGAGTTCCTCAAGCGGTACATGTGTGATGTCTGCGGACACACTACCAGGCAATACGCGAACCTGATGGTGCACATGCGTACTCACACGAACGAGAAGCCGTACGAGTGCCCGCACTGCGACCGCCGCTTCAGCATGCCGAGCAACCGCGACCGCCATCTAGTGGTCCACACCGGCGAGAAACGCTACCAGTGCCAGCATTGCAACCGCCGCTTCACGCAATCCACCGCCGTCAAACTGCACATACAGACCGTCCACCTCAAGATCCCATATAAACCGTGGGAGAAGAAAAACAGGAAACGGCGCAAGGAGGAACCCATTCTTGGACCCGTCAGCTCCGTTAATGTCAATACCATGGCTCAGGCCATGTTGCCCCAGCATAAGCTGCTGTTAGAAACGCAAGGAGACTATTTGAACGCTTTTATTAGCTATACTGACGAATAA
Protein Sequence: MYDLKACTVCFSTNVNLYNMDSGTLRQEFNLISGLKTDCSGLPKYLCVECSAYVKRFVKFRKKCQRAHFTLRELQQRNKEISIHKLEAIDRECLDLKPTLSYIDINRTNYEEAYSQWTRTSRLGIYYGDIIPIIHHSTYTTQVIHMPKKQETIQLDVKVEEEPQPSIAHQHLEQPISIVKDDDDYFDNNDNISDQHSDEEPLPPPAKKPKGKAKNLEPESSSLDEEYASMVAITDKEAQAAVDVYRLFSHGTFRCEVCNKGYNTQQRLTAHLRMHDQHVSGNFLCNLCNYYYKTEYLLKTHTTEKHMYKYECKKCNEVSFDRLSAKQHYIWAHLQRGRKKDANWYESRPKWLSPKGGKRVKGVVTIRPVRKINKLPPDFPMYSPVKHEEQYELILDRKTSRNYLEAEYKCELCYRGFRAVNTYSKHMRKHDPAYAGAYSCDMCKLHFKSPRKVYRHMNITHLFKYSCQICKFVCFNKGQAHMHYRWHKNVTYQCPHCEKEFKKASTRLTHIRIKHPSTNICNMCGHSFVSENGLYCHKQLAHSTEERDVMNASIANPQDPLFCADCNVQFLNEAAFATHLGSSNKHATTNLSIVKPSRRPGGAEGARRRGRPRSAILKSEVLNNGTVTSTSCDLCGEHMANDVQARKHYAEQHPGAEFLKRYMCDVCGHTTRQYANLMVHMRTHTNEKPYECPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSTAVKLHIQTVHLKIPYKPWEKKNRKRRKEEPILGPVSSVNVNTMAQAMLPQHKLLLETQGDYLNAFISYTDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654718;
90% Identity: iTF_00411917;
80% Identity: -