Cstr018972.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387690.1:14086193-14100160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0041 0.25 12.5 0.4 1 23 306 329 306 329 0.93 2 11 0.33 21 6.4 3.2 1 23 345 367 345 367 0.90 3 11 0.00011 0.0071 17.3 2.4 2 23 373 394 372 394 0.96 4 11 0.00064 0.04 15.0 0.2 3 23 400 421 399 421 0.96 5 11 0.03 1.9 9.7 4.7 1 23 424 446 424 446 0.98 6 11 0.002 0.12 13.5 1.0 3 23 534 554 530 554 0.95 7 11 0.38 23 6.3 0.2 2 23 574 596 573 596 0.96 8 11 1.3e-06 7.9e-05 23.5 4.1 1 23 602 624 602 624 0.98 9 11 2e-05 0.0012 19.7 0.8 2 23 630 651 629 651 0.96 10 11 0.063 3.9 8.7 5.1 2 21 658 677 657 680 0.93 11 11 0.86 53 5.1 2.6 3 19 719 735 718 740 0.90
Sequence Information
- Coding Sequence
- ATGGACCAAGGTACCGCCACTATGAATTCACAAAGTTACCCTGTACTGTTGCTCCCAAAAAAGTGCACTACACTGGAAACCAATTGTGAAGTCTCTGATAATGTATTTATTGAGATGAATATTTCCTCTCCTGATACTGAAGGGAACGAAATGTGTATTTATTCAGGTTTTTGTAATGTGAAGTTGATTGACAGTTATGATATGAATATAAGCCACAAAACAAAGGAAAATGTTCCTACTGAGTATAATGATAATGACCTAATACCTGTGCTAATTGATGAGTCGGGAAACCAGATAGCTGATGCGTACAACCAGAGTCAAGTATGGATAGATCCAGCTAGGAGTCCATATGTGTATAATCATTATGACACAAATCCGCAAGAGCATTACTCAGTCTATCATAACACTAGAACTAACCACATAACTGTTGAACAACACAACACATACATAACCCAAAATGTTTATAATTATAACAAAGAGCCTCCAACATATCCGACAGACGAATTTGAACATAAAAAGTTCAGAAAAGTTCAAGTTAGTGAATCGAGTACTCAGCAGAACACAACGGACCCTAACTTCAATTTATATGAAGAAGACGAGTTTGAGTGTGGTGTGTTTCTCTCCCAATTACCTGAGGAGATTCTACAGGAGAATGAGAATAGAGTAAGAGAGGAACGGAAATACATTGATATACCGAGTGACAATGGAGCGTTGAAACAATTGATGTCATCGGACATTCAAACATCTTCTAAGCAGCGGAAGACCATATTGTTTCTGGGTCATGATTCTCATTATGGACAGACCATACAGAAGATTGCTATGAATGATCCTTTTTTGGTGTGTTCGGTGAAGGAGGAGGTTAATTCACAAGTTGTGTATGAAGAGCCCAACTACAGCAACCCTAGTCAGAAGAAATACCAGTGCGACAAATGCAAGCAGATCTTTGACCAGATCATAGAGTTCAGGCAGCATATGGTTGAAGACCACATCGGCCCCAGtacctacGACGGCAGAACAGTCGGCGAAATCAAATTCCTCTGCACCGAGTGCGGCAAAAACATCAAATCGCAAAAGAAATTCGAGGAACACTGCATGTCGCACGGCGACCCGGAGCTAGAATGCAGCAAGTGCCACAAAGTGTTCGCCTCAAAATTCACCTTACGTGCACACAATAAGATCCATTCTCGCAAACACGGCTGCGTGTATTGCTCAAAGACTTATTCTACGCCAGATGGACTGAGGACTCATGTAGCTAAATCGCATTGTATATTCATGTGTGAGCATTGCGACTTTAAAAGTGATAAAAGAAATGATCTAAAAAAGCACGAGAAAAAGCACGAGAATCTATCTGATTTTGATACTTTAAGTGCTATGGATGATGATTCCTGTGAATCAGATATTATTCAATTGACGTCAGATGTTACGGAGAAGCCAGATTTGGAGTTGAAGTCGAATGAAGTTGAAGGGTTGTCGGTTGAAGTGAACAGTGTGAAGGATGAGGATATTCGTAGGGCGGATTCTGTTATAGCTTTGGTTATGTCGAATGAGATTTTTGGATCGAAGGAAAAGCCGAGGCGGTACAAGAAGTGTAAAAAGGCATGCGACGTCTGCCTAAAGATCTTCGATCGCATCAGCGACTTGAAACGTCATCTAATCGAACACATCATAAAGAGCACCCTGGACAAGATACCCGTCAACAGAAACGGGACCCTCAATATACAGTGCGAGGTCTGTCAGGCGGAGACCTTCTCTAAAATTGACAGGTACAAAGCCCACCTACGCGAACACGCCAAACTAACCATCTACAAATGCACATTCTGCGACAAATCCTTCAGTGATTCCAGCAACTTCTCCAAGCACAAGAAAATCCACGGCACAACCTACCTCCAGTGCGATCTCTGCGGTCGCAAATTCAACTCTAAACGTATGCTAATACAGCACATGGAATACCATAACAAGAACGCACCTATACCCTGCCAATTCTGCCACAAAATGTTTCATTTCGAATCGATGTTGAACAAACATATCAAATGCGCGCACGCGAACACTCTAAGCAAATTTAAATGCCGATTCTGCTGTAACTATGTTAAAACTCTAAAGGAAAAGTGGGACCATGAGTGGTCGGTACATAATGTGAGGAAGATGATTGTTGACTGTCTTATGTGTGATTCGAAGTTTAGGAAGTATACGGAGTTGAAGAAGCATTGCTCAATAGTGCATAATGTTGAGATACCTCCCGCTAAAAAATTGTGGCCAAAATAG
- Protein Sequence
- MDQGTATMNSQSYPVLLLPKKCTTLETNCEVSDNVFIEMNISSPDTEGNEMCIYSGFCNVKLIDSYDMNISHKTKENVPTEYNDNDLIPVLIDESGNQIADAYNQSQVWIDPARSPYVYNHYDTNPQEHYSVYHNTRTNHITVEQHNTYITQNVYNYNKEPPTYPTDEFEHKKFRKVQVSESSTQQNTTDPNFNLYEEDEFECGVFLSQLPEEILQENENRVREERKYIDIPSDNGALKQLMSSDIQTSSKQRKTILFLGHDSHYGQTIQKIAMNDPFLVCSVKEEVNSQVVYEEPNYSNPSQKKYQCDKCKQIFDQIIEFRQHMVEDHIGPSTYDGRTVGEIKFLCTECGKNIKSQKKFEEHCMSHGDPELECSKCHKVFASKFTLRAHNKIHSRKHGCVYCSKTYSTPDGLRTHVAKSHCIFMCEHCDFKSDKRNDLKKHEKKHENLSDFDTLSAMDDDSCESDIIQLTSDVTEKPDLELKSNEVEGLSVEVNSVKDEDIRRADSVIALVMSNEIFGSKEKPRRYKKCKKACDVCLKIFDRISDLKRHLIEHIIKSTLDKIPVNRNGTLNIQCEVCQAETFSKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYLQCDLCGRKFNSKRMLIQHMEYHNKNAPIPCQFCHKMFHFESMLNKHIKCAHANTLSKFKCRFCCNYVKTLKEKWDHEWSVHNVRKMIVDCLMCDSKFRKYTELKKHCSIVHNVEIPPAKKLWPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654719;
- 90% Identity
- iTF_00411940;
- 80% Identity
- -