Cstr023401.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:4615839-4635982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0058 0.36 12.0 0.3 1 23 250 273 250 273 0.96 2 14 3.2 2e+02 3.4 1.0 1 23 281 303 281 303 0.94 3 14 4.3 2.7e+02 2.9 0.9 1 23 307 329 307 329 0.97 4 14 0.00073 0.045 14.8 0.7 2 20 335 353 334 355 0.94 5 14 0.0081 0.5 11.5 1.0 2 21 362 381 362 382 0.92 6 14 0.00026 0.016 16.2 1.2 2 23 398 419 397 419 0.95 7 14 0.00023 0.014 16.4 0.3 1 23 424 446 424 446 0.98 8 14 0.0002 0.012 16.6 5.2 1 21 455 475 455 480 0.94 9 14 0.00089 0.055 14.5 1.7 1 23 488 511 488 511 0.92 10 14 0.0037 0.23 12.6 0.3 1 23 517 540 517 540 0.96 11 14 0.03 1.9 9.7 0.4 3 19 554 570 552 571 0.89 12 14 0.021 1.3 10.2 0.9 1 23 584 607 584 607 0.97 13 14 0.03 1.9 9.7 0.7 1 23 680 703 680 703 0.97 14 14 0.03 1.9 9.7 0.7 1 23 778 801 778 801 0.97
Sequence Information
- Coding Sequence
- ATGAGGGAAATAAATATTAATATAGAAGGATACAATGTGAACGGCATATGTGTCGGTTGTTTGAACTATAATCGTAAAATGTTTTATTGTAATCAAATAAAAGAGTGCTTTAAATTACTTGCAGATATCGATGTGCCCGATGGTCTCCAAGTCCAACTTTGTTGGGAGTGCCTTGCCGCTGTCCAAGCTTCACTTCGGTTCAGAAACCTCATTGTTGACTCCTACAATGTCCTCATTGATTACTCTCGGAAGCACACATTCCTCAACGCTCCATCGGACCTGTCTGTTCATGCTCGGCAGAGGCTCAACATTACTAAGCCAGAGCTCTCCGAGCTGCAGGACCTGGTGCAGATAGAGGTGGATGTCAGCGTGATTAAAGAGGAAGCTAAGGAAGAACTTATTGAGGAATCAGAACCAGTGAAACCTGAGACAGACTACTTCGACAACACCGACTTCCCCGACGCTGCAGAGCCGGGATCCTCAGAGGATGATGTACAGTTGTCCAAGCTGAAGAGGAAAAAGGACAGGAAGACCAAGAAAGTGAAGAAGAAGAGAGAGGAACGACAGAGGGCGCAGAAAGTAAAGATTAAGACTGATGAAATAAAAACGGAGAAAGACCAGCAACGCAGCCTCCGCAAGCTGAAGAATTTGCCGACTGATCTAGTGGAGTTGTACACCATGACTGAGGAAGAAATGTGGGAGGTGAGGGCGGAAGACGTGAGTAGCGCAGAGTTCTGCGCCCTCAAATACAAGTGTTCGGACTGCGTCATCGGGTTCAACTCGGAGAGGCTCATGCAGGACCACATGCAGGGGAAACATGTGCCGAAAAGTCCGTCCTGCCACCAGTGCGACGTGTGTCGCGCCTACTTCCTGACGCGCGACAACGTGTCGTCGCACCGCGCGCTGCACGTGTCCGCGTACCGCTGCTGCGCGTGCGGCGCGCGCACGGCGCTCAAGCGCCGCATGTTGGCGCACGCGCGCACGCACCGCGAGCACGCCGTCACGTGCCACACGTGTGGGGAGCAGTTTAGTACAAAATCGAAGTTATCCTATCACCGAGGAGTGTGTAACCAGGCGAGACCACAGTGTGACTGCTGTGGAAAAGTGTTTGCCAACAAGATGACCCTCAAGTACCATCTCAAGATCCTGCCTCAAAATAAAGAAGATAAACCTAAAGAGAAGCTGTACATAACGTGCAAGGGCTGTGATAAAGTCTTCCACTCCAAGAAAAGCTATCGAGCGCATGTCGTGATACACGACGGCCTGACTTACCCGTGTCCCATTTGCGGAAAACTGTTCCAGTGGAAACGGAATCTGGCGCGCCACACAAGGAACCATAGAGACCGCGACGCAGGGGCCACGCACGAATGTCGCGACTGCGGCAAAACGTTCAGCTCTCGAGACTGCTACAACAATCACATGAAACTGAGCAAGAGACATGTTCAAGAGGACGCTTATGTGCACGAATGTTCATACTGCGGGAAGAAATTCGCAACGAAATGGTGCATGGTGGACCACATAGACTGGGACCATCTCAAACGGATCAAGTACCAGTGCAGCGTCTGTTTCAAAGCGTTCAAAACGGCGAAGATCATGGTGGCACACATGAATAATATTCACGAGGGCAAGAAAAACCGTGAGCCGGAGGGCGAACATCTGTGCGAGATCTGTGGCAAATCTTACAAGACGGTTAAGCGACTGAAAGGCCACGTATGGGCGATGCACACGAACCGATCCACAACAAAAAGCTTCAAATGCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCATGACAAGCGGCCCAAGCTTCACATGCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAGGGTATATATGTACTACATGTAGCACATCCATACACAAGCTTCACATGCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAAGCACAAGCTTCACATGCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAAGGTATATATGTACTACATGTAGCACATCCATACACAAGCTTCACATGCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCACGACAAGCGGCCCAAGCTCTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATCAAGATGATGCATGACAAGCGGCCCAAGCAAATCCGTCCCCTGCCGGCCAAGAAACCAGAGTTTTCCGGCGCCGAGCTCATCGCGCGCGAGTACTTCCAGCAGCCCGCCGGCCTCGCGCACATACCCCTACACAACATAGTCCAGAACATCGTGTAA
- Protein Sequence
- MREININIEGYNVNGICVGCLNYNRKMFYCNQIKECFKLLADIDVPDGLQVQLCWECLAAVQASLRFRNLIVDSYNVLIDYSRKHTFLNAPSDLSVHARQRLNITKPELSELQDLVQIEVDVSVIKEEAKEELIEESEPVKPETDYFDNTDFPDAAEPGSSEDDVQLSKLKRKKDRKTKKVKKKREERQRAQKVKIKTDEIKTEKDQQRSLRKLKNLPTDLVELYTMTEEEMWEVRAEDVSSAEFCALKYKCSDCVIGFNSERLMQDHMQGKHVPKSPSCHQCDVCRAYFLTRDNVSSHRALHVSAYRCCACGARTALKRRMLAHARTHREHAVTCHTCGEQFSTKSKLSYHRGVCNQARPQCDCCGKVFANKMTLKYHLKILPQNKEDKPKEKLYITCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRDRDAGATHECRDCGKTFSSRDCYNNHMKLSKRHVQEDAYVHECSYCGKKFATKWCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKNREPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSTTKSFKCKLCPATFTWQTSIYKHIKMMHDKRPKLCPATFTWQTSIYKHIKMMHDKRPKLHMQALPRHLHLADLHLQAHQDDARQAAQGIYVLHVAHPYTSFTCKLCPATFTWQTSIYKHIKMMHDKRPKLCPATFTWQTSIYKHIKMMHDKRPKHKLHMQALPRHLHLADLHLQAHQDDARQAAQGIYVLHVAHPYTSFTCKLCPATFTWQTSIYKHIKMMHDKRPKLCPATFTWQTSIYKHIKMMHDKRPKQIRPLPAKKPEFSGAELIAREYFQQPAGLAHIPLHNIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -