Cstr023172.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- Znf784
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:1304898-1322480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.24 15 6.9 0.8 2 23 304 325 303 325 0.96 2 11 9 5.6e+02 1.9 0.2 1 21 359 379 359 381 0.74 3 11 0.00014 0.009 17.0 3.0 2 23 387 409 386 409 0.96 4 11 0.0042 0.26 12.4 0.2 2 23 418 440 418 440 0.91 5 11 0.012 0.74 11.0 0.4 2 20 463 481 462 484 0.92 6 11 0.0072 0.45 11.7 2.4 3 23 494 515 493 515 0.95 7 11 2.7e-05 0.0017 19.3 1.0 1 23 520 543 520 543 0.97 8 11 0.0026 0.16 13.1 2.3 1 23 567 589 567 589 0.98 9 11 1.4e-05 0.00085 20.2 0.8 1 23 595 618 595 618 0.95 10 11 0.00038 0.023 15.7 1.1 1 23 624 646 624 646 0.98 11 11 3.7e-06 0.00023 22.0 0.5 1 23 652 675 652 675 0.96
Sequence Information
- Coding Sequence
- ATGACTACAATTAAGCTGGAATTAGACGCGGAGGAGCCGCTGGCGTGCCGTATTTGCCTAGTAACTGATGTGAAGTTGTACGGGATCTACGAACGACGTTTGGATGCAGCTTTTCTGGATATTACGGGAACAACGCTATCTGCGGGCGACGGGCTGCCGCGGCAGCTGTGCGCGGAGTGCGCGTCGCGGCTGCGCCGGAGCCTCGATCTGCGTCTGCGCAGCCGCCGCGCGCACGACATCCTTACACAGTGTCTCGCAGAACAGCATTACATCACAACAGAGTACATCCGCGGGCTGGACCGGGTGTCTCTCTGCCTGTTGCCCGCGGACGACAAGGACTTCGAAGCCTCGGAGCCCTACGCGCCGCTCGAGGAGCCCTATCCGCAGCCCAGCCTACAGGACTATCTCGACGATGACATCTCTAATGACAGCTCACAACTCCTGTCAACATTCTGCACTCGTGGCTTACGGCAAGGCGATCTGACAGACGTCAAAGATGACAGCTACATAGAGTTGCCAGTCGTCGGAGAAATGGTAGAATTGGACGAAAAACTGGGAGAGATGAAACCGGTGAAAACTAAGATTAAGAGAGAGCGGGGCGTTAAGAGGAAAAGAAAGGAAAAATCAGTTAAGAAGGAGAAGAAAAAAGGGAAAACGAGCAAGAAACGGAAATCAATAGAAGAGGATCCGGAAGTGAAACAAGAGAAGCTGGGGGTCGAATGGGTGGCCAAGAAGAAGACCCCTTACAAGCGGAAGAAGAAGGGGTTCAAGCGGTACTTCATGTGCGAGGAGGATTATGCCAAGTTCGAGGAACGGTACAACATACAAGTGGTCCGTTTGTCGGAAGAGGAGCAGCTCCGCGAGATGGCGGCCCGCAAGGAGTCGGAGAACTACCAGCACGCGCTCGTGCGCTGCGACAAGTGTTTTAAGGGCTTTCTGTCCATGTTCACTTATGAAAACCACATCAAAGTACACGACCCGGCGCTGGGTCCCAACGAGTGCCACTTCTGTTTCTGCCGCTTCAAGTGGCCGAACAAACTGCGCACGCACCTCATCGAGTGCCATCAGCTCAAATACATTTGCAAGGAGTGCAAGCTGGTGATTCGTGGGCGCTACATGGCAGTGATGCACGCGCAGTTCCACGCCGGCAAGACCTGGGAGTGCAAGCACTGTCCGCTCACCTTCAAAAAACAATCAACGTTCTACACTCACCTACGAATAAACCACTCAACGCAGAACGCATTAGGGGGCACTTGCGATATTTGTGGAGAGACATTTACGGGCGCCATGGGACTTCGTATGCACAAGACTCAGACACACAATAAGGCAAGTGATATGAAGTCAACACATACACCTGCGATACATGCAAAAGAAATAAAGGCGCTAAAATGTACAATATGCAAGATACAGTTCGAGAACAAGGAGGCGCTAGACCGACACTTTCAGCCTCACGACGACTGTGATCCCAAGTTGCGGTTCTGCGAGACATGCGGCTGTTCCTTCGCTGACGAAGACCAGCTGAGTCTCCACCGGCAGCACGTGCACGGCGTAGAAATATACAAGTGTGACGACTGCAACAAATCATTCTTGTCAAAGTCTTCCCTATCAACGCACATCGACCGCGTGCATTTGAACATAAAGCCACGTTTCCGGTTCTACAACTACAAGAAGAGCGCCCGGCCCGGCGTCAAGCTCGACTACATGTGCGAAACCTGTGGGAAGGCTTACACGTGCTTCGCGCTCCTAAAGACGCATCAGATGACCCACACGGGGGAGCGGCCTTTCAAATGCTCGCTCTGCCCGAAAAGCTTCATCACCGCCTCACAGCTGaagGGCCACCGGGACAGCTTCCACGCGCGCATCCGGAAGTACCGCTGCCCGCAGTGCCCCAAAACGTTCCTCCGGCAGTCTTCCATCTACAAACACCGCTTGATCCACACGGGCGAGAAACCCTACGAGTGCAGCATATGCAGCAAGGCGTTCACGCAGTCGGGCTCGCTCACCACGCACGTCAAGTACGTGCACATGAAACTTAAGCCGCCGCCGCGGAAGCGAAACAAGACCATCGACAAGGCTTATTAG
- Protein Sequence
- MTTIKLELDAEEPLACRICLVTDVKLYGIYERRLDAAFLDITGTTLSAGDGLPRQLCAECASRLRRSLDLRLRSRRAHDILTQCLAEQHYITTEYIRGLDRVSLCLLPADDKDFEASEPYAPLEEPYPQPSLQDYLDDDISNDSSQLLSTFCTRGLRQGDLTDVKDDSYIELPVVGEMVELDEKLGEMKPVKTKIKRERGVKRKRKEKSVKKEKKKGKTSKKRKSIEEDPEVKQEKLGVEWVAKKKTPYKRKKKGFKRYFMCEEDYAKFEERYNIQVVRLSEEEQLREMAARKESENYQHALVRCDKCFKGFLSMFTYENHIKVHDPALGPNECHFCFCRFKWPNKLRTHLIECHQLKYICKECKLVIRGRYMAVMHAQFHAGKTWECKHCPLTFKKQSTFYTHLRINHSTQNALGGTCDICGETFTGAMGLRMHKTQTHNKASDMKSTHTPAIHAKEIKALKCTICKIQFENKEALDRHFQPHDDCDPKLRFCETCGCSFADEDQLSLHRQHVHGVEIYKCDDCNKSFLSKSSLSTHIDRVHLNIKPRFRFYNYKKSARPGVKLDYMCETCGKAYTCFALLKTHQMTHTGERPFKCSLCPKSFITASQLKGHRDSFHARIRKYRCPQCPKTFLRQSSIYKHRLIHTGEKPYECSICSKAFTQSGSLTTHVKYVHMKLKPPPRKRNKTIDKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289986;
- 90% Identity
- -
- 80% Identity
- -