Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:192026-214463[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.036 2.2 9.5 2.9 1 19 255 273 255 278 0.91

2 14 0.98 60 5.0 1.9 1 23 285 307 285 307 0.96

3 14 0.075 4.6 8.5 3.3 1 23 311 333 311 333 0.96

4 14 0.003 0.19 12.9 2.6 1 23 338 361 338 361 0.97

5 14 1.5 90 4.4 0.1 2 23 367 389 366 389 0.77

6 14 0.92 57 5.1 0.5 3 20 400 417 399 419 0.91

7 14 0.0022 0.14 13.3 0.0 3 23 430 451 429 451 0.95

8 14 0.027 1.7 9.9 0.2 2 23 457 479 456 479 0.94

9 14 0.0002 0.013 16.5 2.2 1 23 502 524 502 524 0.98

10 14 0.021 1.3 10.2 0.1 1 17 530 546 530 546 0.89

11 14 1.5e-05 0.00093 20.1 2.6 1 23 590 612 590 612 0.96

12 14 0.0013 0.082 14.0 1.5 3 23 620 640 618 640 0.96

13 14 1.6e-06 0.0001 23.2 1.6 1 23 646 668 646 668 0.97

14 14 4.5e-05 0.0028 18.6 0.4 1 23 674 697 674 697 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.036	2.2	9.5	2.9	1	19	255	273	255	278	0.91
2	14	0.98	60	5.0	1.9	1	23	285	307	285	307	0.96
3	14	0.075	4.6	8.5	3.3	1	23	311	333	311	333	0.96
4	14	0.003	0.19	12.9	2.6	1	23	338	361	338	361	0.97
5	14	1.5	90	4.4	0.1	2	23	367	389	366	389	0.77
6	14	0.92	57	5.1	0.5	3	20	400	417	399	419	0.91
7	14	0.0022	0.14	13.3	0.0	3	23	430	451	429	451	0.95
8	14	0.027	1.7	9.9	0.2	2	23	457	479	456	479	0.94
9	14	0.0002	0.013	16.5	2.2	1	23	502	524	502	524	0.98
10	14	0.021	1.3	10.2	0.1	1	17	530	546	530	546	0.89
11	14	1.5e-05	0.00093	20.1	2.6	1	23	590	612	590	612	0.96
12	14	0.0013	0.082	14.0	1.5	3	23	620	640	618	640	0.96
13	14	1.6e-06	0.0001	23.2	1.6	1	23	646	668	646	668	0.97
14	14	4.5e-05	0.0028	18.6	0.4	1	23	674	697	674	697	0.95

Sequence Information

Coding Sequence: ATGTTGAAAAGCTTGAAGCAGGAAAGTGCGGAGGAGCTCTTAGCTTGCCGCATATGTCTCGCAACCGACACTCATTTGTATGGAATTTTGGAGCACCGATTGGAAAATGCTTTCATTGATATTACAGGGACTACCCTGTCGGCATGGGACGGCTACCCGCAACACATCTGCGTGCCGTGCCGCGCGCTGCTGCGCCGCGCGAGCGACCTCCGCGCCCGCTGTCGCCGCGCGCAGCGGGCACTCAAGAGGATCCTCATGTTACAACATACGATAACAACTGGCTACATTCGTACAGTGGACCGTATAGCTGAGGGCCTAAGTCTGCCTCTTTCCATCTCTGTCTGTCCTGAGCCTGTACTCTTCCAATACGATGACACTGACGATCTTATAAAAGAGGAGATCCCCCTCCTCTCCCCGTCCCCGCTCCCCTCCCTCCCCTCCCCCCCCAAAGACGACATCGTAGTGAAAGACGAGCTGCCTTGCGAGTATGAATCCAACGATGACGTCGCGCTGAGCGAACTGCAGGAAAAGCCTAAGGAACATAAGGAGAAGAGGAAAAAAGTTTTAAGAAAATCGAAGACGAAAAAAACGAAGACTGAGCAAGTGAAGAGTAGAGAACGGAAAAAGACGGAGAAGATACGGGATGAAGACTTTCCCGCGTTCGAGAAGGAATACAACTTCGATGTCGTCATACTATCGCGGGAACAGCAGATTGAAGACATGGCGTCGCGAAAAGAGAAGGACAACTATATGAACTCGCAGTTCAAATGCGAGAAATGCTTTAAGGGGTTCTACACCGAGGCCACGCTCGCCAACCACGACTCGAAACATCACGATGAGGCTGTAGGTCCCCACTCGTGCGAGCTTTGCCTGTGCCGGTTCCGTATTCCAGCCATCCTGCGGCGCCACCTCGCCACGCACCGGTTAAGATTCGTGTGTCAGCACTGTGGCTTCACCGCCAGAGACAGgTCGCACGCCATGACTCACTCCAAAGAGCACAAGGGTCTGCGTTACGAGTGCCAACACTGCGGAGACACCTTCAAAAAGCGGTCAACGTACGGCACCCACGTCCGCATCCAGCATCCCAACCAGAACAAGTCGTGTGACGTGTGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAATCGCATCGACAGGTGGTGGAACAAGGCGCGGCGCACTGCGCGCAGTGTGGCGTGTGCTTCGAGAGCGAGTACGCGCGCGCGCGACACACCGCGCTCGCCGTCCAAGGCTGCCAGCACGCCAGAGCATGCGCACTTTGTGGAGAGAACTTCAAGGACGAACCGGCGCTGCAGGCACATGTGAGAGAGAGACACCAAGATCGGCAGACGCAGTGCCAGGAGTGTGACATGACGTTTGCTAGCGAGGCGTCCCGCAGCGTGCACTACGAGCGAGTCCATCTCAAGGTGAAAGTGCGCCGCTGCCTGCCCAAGACGGGGCGCAAGTACGATCGCTACGGGGACCACTTCATGTGTGAAATGTGCGGCAAGAAGTGCCAGAACAACATCGCCCTGAAGTACCACATCCGCTCTCACACAGGGGAGAAGCCGCACGCCTGCCCGCACTGCCCGAAGCATTACTCTACGCCCGTCGCGCTGCAGGGGAGAAGTCGCACGCCTGCCCGCACTGCCCGAAGCACTACTCCACGCCCGTCGCGCTGCAGGTACAGTTCACTTCACTACAACATCGCCCTGAAGTACCACATCCGCTCTCACACAGGGGAGAAGTCGCACGCCTGCCCGCACTGCCCGAAGCACTACTCCACGCCCGTCGCGCTGCAGTACCACATCCGGTCGCACACGGGGGACAAGCCGCTGGCGTGCCCGCACTGTCCGCTGCGTTACGCCACTCACAAGGGACTGCAGACTCACTTGCTCAAGCACACAGGCGAGCGCCCGTTCAAATGTGAGCTGTGTGGGAAGGCCTTTACACAGAAGACCATGTTACAGAAACATAAAACGGTACACACTGGTGAGAAACCATACGCGTGCGACATATGCGGCAAGGCGTTCACCCAGTCGGGCTCCGTGCACACGCACGTCAAGTACGTGCACAAGAAGCTGCCCGCGCCGCCGCGCAACCGCGGCAAGCGAGACAAGCCCGACTGA
Protein Sequence: MLKSLKQESAEELLACRICLATDTHLYGILEHRLENAFIDITGTTLSAWDGYPQHICVPCRALLRRASDLRARCRRAQRALKRILMLQHTITTGYIRTVDRIAEGLSLPLSISVCPEPVLFQYDDTDDLIKEEIPLLSPSPLPSLPSPPKDDIVVKDELPCEYESNDDVALSELQEKPKEHKEKRKKVLRKSKTKKTKTEQVKSRERKKTEKIRDEDFPAFEKEYNFDVVILSREQQIEDMASRKEKDNYMNSQFKCEKCFKGFYTEATLANHDSKHHDEAVGPHSCELCLCRFRIPAILRRHLATHRLRFVCQHCGFTARDRSHAMTHSKEHKGLRYECQHCGDTFKKRSTYGTHVRIQHPNQNKSCDVCGETFLGALGLALHKKKSHRQVVEQGAAHCAQCGVCFESEYARARHTALAVQGCQHARACALCGENFKDEPALQAHVRERHQDRQTQCQECDMTFASEASRSVHYERVHLKVKVRRCLPKTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQGRSRTPARTARSTTPRPSRCRYSSLHYNIALKYHIRSHTGEKSHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCELCGKAFTQKTMLQKHKTVHTGEKPYACDICGKAFTQSGSVHTHVKYVHKKLPAPPRNRGKRDKPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -