Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:915887-928022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00017 0.01 16.8 3.1 1 23 218 240 218 240 0.99

2 12 8.6 5.3e+02 2.0 0.1 1 23 247 270 247 270 0.88

3 12 6.7 4.1e+02 2.3 0.6 1 14 274 287 274 288 0.89

4 12 0.0024 0.15 13.2 2.2 1 23 341 364 341 364 0.96

5 12 0.006 0.37 11.9 0.3 3 23 370 391 369 391 0.96

6 12 0.0084 0.52 11.5 0.0 3 20 403 420 402 422 0.94

7 12 0.0097 0.6 11.3 0.0 3 23 435 455 434 455 0.96

8 12 0.00051 0.032 15.3 1.1 2 23 462 484 461 484 0.96

9 12 1.1e-05 0.00069 20.5 1.1 2 23 500 521 499 521 0.97

10 12 4.4e-06 0.00028 21.8 3.0 1 23 527 549 527 549 0.99

11 12 5e-05 0.0031 18.5 2.2 1 23 555 577 555 577 0.94

12 12 3.7e-06 0.00023 22.0 2.0 1 23 583 606 583 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00017	0.01	16.8	3.1	1	23	218	240	218	240	0.99
2	12	8.6	5.3e+02	2.0	0.1	1	23	247	270	247	270	0.88
3	12	6.7	4.1e+02	2.3	0.6	1	14	274	287	274	288	0.89
4	12	0.0024	0.15	13.2	2.2	1	23	341	364	341	364	0.96
5	12	0.006	0.37	11.9	0.3	3	23	370	391	369	391	0.96
6	12	0.0084	0.52	11.5	0.0	3	20	403	420	402	422	0.94
7	12	0.0097	0.6	11.3	0.0	3	23	435	455	434	455	0.96
8	12	0.00051	0.032	15.3	1.1	2	23	462	484	461	484	0.96
9	12	1.1e-05	0.00069	20.5	1.1	2	23	500	521	499	521	0.97
10	12	4.4e-06	0.00028	21.8	3.0	1	23	527	549	527	549	0.99
11	12	5e-05	0.0031	18.5	2.2	1	23	555	577	555	577	0.94
12	12	3.7e-06	0.00023	22.0	2.0	1	23	583	606	583	606	0.98

Sequence Information

Coding Sequence: ATGGAGGAATTACTTGCGTGTCGAGTATGTTTAATAACGGACGTTAAACTGTTCGATATGTTCAAATACAAACTTGCAGAATCATATCAAATTATAACAGGAACTCAGATATCAGGAGATGGTCTTCCGCTACATATCTGCAGTATATGTGCTGTGTTGCTGCAGAAAAGCGTGTTGTTCAAAAGTAAATGTCATAATGCTGAACATATACTGAAGTTTTCACTAATGCAGCAACATATGCTGACTACTGCCTACCTAAGGACCATAGACCGTAGCCTCCACTCTCTCACTCTGCCCCTCTCCACTACCACCATAAACAGCACCATAGACATCTCCTTCCAAATAAAAGAAGAATCCACAGACATTGAAACCACAGATGAAATAGAAAACACAGATAACATATCCGTCAAATATGAATCTGATGAAGAGCCTCTAGCCAAAAAAGTAAAAAAGAAAAGAAAGAAGAAATTAAAAATAAAAGAGGAGATAAAATTCGAAAATGGTAATGATTATATTAATGAGGATAAAGTTATCAAAGATATAACTTATTTAGAAGGTTTAGATGATATACAAGTGGTTGTGTTGAGTAAAGAGGAACAGATAGAAGAGGTGTTGTTGAGGAAGAATTCATTTAATTACTTGAACTCGTTTTATAAATGCGATAAGTGCTATAAGGGGTTTATAACGGATTCAACATTTAAGAATCACATGACAAGGCATGCGCTGTTAAGTGGCCCGCACGCTTGCGAGGTGTGCCTCACACGCTGGCCGACAGTACGTGCGTTGCGCGCGCACGTCATCACGTCGCACGAGCGCAAGTACGTCTGCCGCAAGTGCAACCACGTCTCCAAGTCCAGGTCAGTGACCTTTAGTAGCAGAGCATTATCTTCCGTATTACGCGCGCTCCGCGCACACGTCATCACGTCGCACGAGCGCAAATACGTCTGCCGCAAGTGCAACCACGTCTCCAAGTCCAGTCACAGAGCAAAGGAACACAGTAAATGGCATCTCGGATTCACGTACACATGCAAGATTTGTGGAGCTTCGTTCACCAAATCTACGAGCCACCTCACACACATCCGGCTGCAGCACCCGTCGAACAACTGCTGCGAGCTGTGTGGCGAGTCCTTTATCGGGGAGTACGGGCTGGCCATGCATCGCAAGAAGGCGCATAGAGACCAGAGTAACATCAAGTCGGAGTCTCTGTGCGTTCTCTGCGGCGTACAGTTTCGGAGTCTCGACGCGTTGAACAGGCACATCAGCGCCGCGGAGGACAACGCGTGTAACACTAGCTTAAGGCCGTGCCTCAGTTGCGGCGAGGGATTCGCTTCGGACGAAACGCTCAAAGAACATTTGAAGATACACGTGACTGACGACTATGTTAAATGTGAAGAGTGCAACAGAACATTTGCGCACGAGAAGTCGTACGCCATCCACTACCAACGAGTACATCTGCGGGTCAAGTCCGCTTCCCGACGAGACCACTCCGACAGGGTCGTCTGCGAGATCTGTGGCAAGAAGTGCACGTCGAACGCCACGCTCGTGTACCACCAGCGGACGCACACGGGGGAGAAACCCTACCAATGCACCAAGTGCCCCAAGCGGTTCAGCGTCTGCCAACTGCTGCAGATCCACATCCGCACACACACGGGCGAGCGACCGTTCAAGTGCTCGCGCTGCCCAAAGGCCTTCAAACACAAGGCGGCGCTCAACCGTCACGACCGGGTGCACACCGGGGCGAAACCCTACATGTGCGCGCACTGCGGCAAGTCGTTCTCGCAGTCCAACTCCATGAAGACTCACGTCAACACCGTGCACCTCAAGCTGCCCGCGCCCTACCGCCATCGGAGGAACAAGACAGAATAA
Protein Sequence: MEELLACRVCLITDVKLFDMFKYKLAESYQIITGTQISGDGLPLHICSICAVLLQKSVLFKSKCHNAEHILKFSLMQQHMLTTAYLRTIDRSLHSLTLPLSTTTINSTIDISFQIKEESTDIETTDEIENTDNISVKYESDEEPLAKKVKKKRKKKLKIKEEIKFENGNDYINEDKVIKDITYLEGLDDIQVVVLSKEEQIEEVLLRKNSFNYLNSFYKCDKCYKGFITDSTFKNHMTRHALLSGPHACEVCLTRWPTVRALRAHVITSHERKYVCRKCNHVSKSRSVTFSSRALSSVLRALRAHVITSHERKYVCRKCNHVSKSSHRAKEHSKWHLGFTYTCKICGASFTKSTSHLTHIRLQHPSNNCCELCGESFIGEYGLAMHRKKAHRDQSNIKSESLCVLCGVQFRSLDALNRHISAAEDNACNTSLRPCLSCGEGFASDETLKEHLKIHVTDDYVKCEECNRTFAHEKSYAIHYQRVHLRVKSASRRDHSDRVVCEICGKKCTSNATLVYHQRTHTGEKPYQCTKCPKRFSVCQLLQIHIRTHTGERPFKCSRCPKAFKHKAALNRHDRVHTGAKPYMCAHCGKSFSQSNSMKTHVNTVHLKLPAPYRHRRNKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409579; iTF_00410645;
90% Identity: -
80% Identity: -