Cstr023183.2
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:1404773-1421533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.03 1.9 9.7 2.7 1 23 323 346 323 346 0.98 2 13 0.94 58 5.0 0.5 2 23 354 376 354 376 0.94 3 13 0.00026 0.016 16.2 2.6 2 23 408 430 408 430 0.96 4 13 0.0042 0.26 12.4 0.1 2 23 439 461 439 461 0.92 5 13 0.038 2.4 9.4 0.3 2 21 470 489 469 490 0.93 6 13 1.9 1.2e+02 4.0 0.0 3 23 503 524 501 524 0.90 7 13 0.0016 0.1 13.7 0.5 1 23 529 552 529 552 0.96 8 13 0.076 4.7 8.5 0.2 1 13 583 595 583 597 0.88 9 13 0.00029 0.018 16.1 6.7 1 23 630 652 630 652 0.97 10 13 1.2e-06 7.7e-05 23.5 0.7 1 23 658 680 658 680 0.99 11 13 0.0002 0.012 16.6 0.7 1 21 686 706 686 707 0.96 12 13 0.0022 0.14 13.3 3.1 2 23 717 739 717 739 0.94 13 13 1e-05 0.00063 20.6 0.4 2 23 747 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGGACACCGTGAAAGTGGAGGAACAGTTGGAGTTGTTGGCATGTCGGATTTGTCTGGCTTGTGACGTGAAATTGTATCATATTCGCGACGCTGGCTTAGATATTTCGTTTTCGGAACTTTTGGGATTTCCGGTAACGGCATCAGATGGGTTACCTCAGCACTTATGCAGCTGGTGTCGCACACTCCTGCTAAAAGCAGTGCGGCTGCAAGCTTGCTCAAGACGATCAGACAGCTTGCTTCGACAGGCGCTCACACACCAACAAACAATAACAAACGCATACATCCGCACTATCGACCGTTCTATACACAAACTGACACTCACACTCTCGCAAAACTTAAAAACCAACGTTCAGTATTACTTTGAACAAGACAAAACTCTGGAAAATGTAAATGTCCATCTAGATATTGATATTATCAAAGATGAGATAGAACCAAATGAAAATGGTTTGAACAATAAACTTGACAAGGTAGAAACAGATATATTACAGATTAATGTAATCGAAACTGACATTAAAGCGTTTGATATAAATTGCGACGGTATAGCAGACAGTGATGATTCTGATGAAGATTCTAAAATGAATCTTCAAGAATATAAGTATAAAATGGAAAATGTTAATCTTGAGCCAAAACCTGCGTTAGTCAAAGTTAAAATAGGAACTAGATTAGATAAACAAATAATGAAAGTCTCAAAAAGACGTAGACTAAAGGAAGTTAATGTAGAAACATTTAAAAATAAAAAGCTACATTCAAAAGCCAATAAAGTAACGAAGAAAAATAAAGAAACAAATGAAGTAAAAGCAAAAGCCGGTAAAGAAAAAGACTCTGAACCAGGAAGGTTTTTTACAATAGAGGAAATAGAAGAGTTTGTAAAAAAGCATAATTTTGAAATCCAGTGTTTGACTGAGGAAGAAATGGCGGAGGATATGGAAAGGAGGAAAGTGTCGGATCGGTATAAACACTGCAAGTTCAAATGTAACTTGTGTTATAAAGGCTTTCTGACGTCCACTACTTTTGACAATCATATGAAGAAAGATCATGACCCGCGTAACGCAAAGAACGAGTGCCGGTTATGCCGCGTGAGCTACCGCTACGGGTTCTATCTCAAACAACACGTGCAGAACGCGCACCGGCTGCGGCTGCGCTGCGCCGAGTGCGGCGAGGGCGTGTGGGGCAGGAAAGAGTGCGTCGCGCACGCGGCGCGCCACGCCGGCACCACGCGGCAATGCAAGTACTGCGGGAAGCACTTCCTTAAGAAATCGTCGTACACATGGCACATGCGTGCAGCGCACCCCGTCGAGAACTCTGCGCGCGGCTCGTGCGAACTATGTGGGGAGATCTACACCAGTGCCAAGGGACTTAAGGCGCATAAACTACTCGCGCACAATAAGGGTTCTGCGCCCGAGTTGCAGTGCGGCCGCTGCCGTGCTCAGTTCGACAATAAGGAGGCACTAACGAAACACCGGCAACAACAAGTTGACGACAAGTGTGATCCTGACTTAAGCCCGTGCGCGGCGTGCGGCGCGGGCTGCGCGGGCGCCGAGGCGCTGCTGCGGCACATGCACGCGGCGCACAGCGTCGATATCTTCACCTGTGACCTCTGCAACAAATCATTCCTATCCAAGCCGTCGCTCTCGACCCATATAGACCGCGTCCATCTCGGCATCAGGCCGCTGCAGCACCACCAGCTCACGCAATACAAGAAGCACAGCAAACGCCCTGTGCAGCACAAGAGACGGGGGCACGACCACATGTGCGAGCACTGCGGGAAGGCCTACACGACATTACACCGCGTCCACCTCGGCCTCAGGCCGCTACACCACCACCAGCTCACGCAGTACAAGAAGCACAGAAAACGCCCCGTGCAGCACAAGAGACGAGGGCACGACCACATTTGCGAGCACTGCGGAAAGGCCTACACGACACACCAGTTTTTAAAGAACCACCAGATGACGCACACGGGTGAACGGCCCTTTAAATGCGATCGCTGCCCTAAAGGGTTCACCACAGCTGTGCAGCTCACGTGGCACACGCGGACACACACGGGGGAGCGACCGTTCCAGTGCGACCAGTGTCACCAGGCGTTCAGTCTAGAAGGCAACCTCAGGAGGCACCGCAAAGCGGCGTACAGCCTAGGAACACACACGGAGGAGTGCCACCGGTGTCACCAGGCGTTCAGTCTAGAAGGCAACCTGAGGAGGCACCGCAAAGCGGTGCACCTAGGGCTCCGCAAGAACGTGCCGTGCCCGCGCTGCGAGAAAACGTTCTCCACTAACTCCACCATGAAGCTCCACGTCAGAACAGTGCACGACGGAGCGCCCTGGCCGCGCCGAGACCGCAGGCCGAGGAAACACCCACCGCAGATTACAGAAGTTTTATAA
- Protein Sequence
- MDTVKVEEQLELLACRICLACDVKLYHIRDAGLDISFSELLGFPVTASDGLPQHLCSWCRTLLLKAVRLQACSRRSDSLLRQALTHQQTITNAYIRTIDRSIHKLTLTLSQNLKTNVQYYFEQDKTLENVNVHLDIDIIKDEIEPNENGLNNKLDKVETDILQINVIETDIKAFDINCDGIADSDDSDEDSKMNLQEYKYKMENVNLEPKPALVKVKIGTRLDKQIMKVSKRRRLKEVNVETFKNKKLHSKANKVTKKNKETNEVKAKAGKEKDSEPGRFFTIEEIEEFVKKHNFEIQCLTEEEMAEDMERRKVSDRYKHCKFKCNLCYKGFLTSTTFDNHMKKDHDPRNAKNECRLCRVSYRYGFYLKQHVQNAHRLRLRCAECGEGVWGRKECVAHAARHAGTTRQCKYCGKHFLKKSSYTWHMRAAHPVENSARGSCELCGEIYTSAKGLKAHKLLAHNKGSAPELQCGRCRAQFDNKEALTKHRQQQVDDKCDPDLSPCAACGAGCAGAEALLRHMHAAHSVDIFTCDLCNKSFLSKPSLSTHIDRVHLGIRPLQHHQLTQYKKHSKRPVQHKRRGHDHMCEHCGKAYTTLHRVHLGLRPLHHHQLTQYKKHRKRPVQHKRRGHDHICEHCGKAYTTHQFLKNHQMTHTGERPFKCDRCPKGFTTAVQLTWHTRTHTGERPFQCDQCHQAFSLEGNLRRHRKAAYSLGTHTEECHRCHQAFSLEGNLRRHRKAVHLGLRKNVPCPRCEKTFSTNSTMKLHVRTVHDGAPWPRRDRRPRKHPPQITEVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409567;
- 90% Identity
- -
- 80% Identity
- -