Cstr021678.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:9033467-9037445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00015 0.0092 17.0 1.4 2 21 159 178 158 179 0.94 2 18 0.011 0.69 11.1 0.6 1 23 212 235 212 235 0.92 3 18 3.6e-05 0.0022 18.9 0.9 2 23 241 262 240 262 0.95 4 18 0.0013 0.078 14.0 3.0 2 21 266 285 265 286 0.93 5 18 0.036 2.3 9.5 0.4 2 23 329 351 328 351 0.94 6 18 1.6 98 4.3 0.6 3 23 359 378 358 378 0.81 7 18 0.0014 0.088 13.9 0.7 1 23 384 406 384 406 0.98 8 18 0.00084 0.052 14.6 0.5 1 23 412 435 412 435 0.97 9 18 0.0035 0.22 12.6 0.2 1 23 444 467 444 467 0.97 10 18 0.15 9.1 7.5 6.7 1 23 477 499 477 499 0.98 11 18 0.86 53 5.1 1.1 2 10 619 627 618 639 0.75 12 18 0.013 0.83 10.8 0.6 2 23 670 692 669 692 0.95 13 18 0.0045 0.28 12.3 3.4 3 23 699 720 698 720 0.96 14 18 0.43 27 6.1 2.1 3 21 725 743 724 744 0.90 15 18 0.00016 0.0097 16.9 0.1 1 23 755 778 755 778 0.94 16 18 0.00013 0.0082 17.1 4.3 1 23 785 807 785 807 0.97 17 18 0.003 0.18 12.9 0.6 1 23 814 836 814 836 0.98 18 18 0.037 2.3 9.4 0.8 1 23 857 880 857 880 0.95
Sequence Information
- Coding Sequence
- ATGAACCGTCAAGTGGATGTAAAAGCGCTAGTGTCCCACATAGTAAGAGGTGATGGCTTGGACAAATGTCGAATTTGTATGGGAGACACCACCGAAGGCCAGGTTTACCTCGGCGACACGGTCATGATGGATGGAGAACGACCGGTCACGCTTGCTGAATTATTGGAAATAATCACAGGCATCGAGGTTCCGCTGGAGGAGGACCTACCTGCAGGCCTGTGCACCGAATGTGCTCAGAGAGCTATGGATGCTGCCAGCTTCCGAACGCTGTGCAGGCAAGCCGCTAGCCAATGGGACTCCACTCTGCAGCTCCTCACTAACTGCTTACCGATCAAGTACAAAGATACAACCATGTACATAATTATGAAGAATGATGAAATCTCTATAGCTAACAATCCAAAAGGTAAACCAGATAAATATGAAAAAATTTCTTCACAAAAAGAGGTGCAGGTTAAAGATGTAAAGCACAAATGTCAATGTCCGGACTGTGGGAAGAAATTTGCGTATGCACAACATCTGTATTTACATTTAAAGGAGTCTATGGACTTTAAGCGGGCCTGCTATGTTTGTGCTAAGATCATGACTAGAGATGAACTGATTCTGCATTTAATAACTGCTCATCACCTTGATACTTATGATTGTAAGAAGTGTCCAGCTTTGTTTAAGTCCCGTAAGTTTCTAATTCGGCATACGGAGGAGGCGCACAGTCCTGGAGCGTGCACATGTGGTGATTGTGGACGTAGCTTTAAATCCAGGCCAGCTTTCAACGCTCACCTATCAGTCCATGCTGTCAAAACATGTCCAGGTTGTGATAAAGTATTCAGAAATCAAACATGCTACTTACATCATGTGAAGAAATGCTGCGATTTGGACATTAGTCGGAAGACTCATCAAACAAAGCATAAAGTTACTATAGAAGTTAAGAATAAGAAAAGTGAGAGGAGAACTAGAGTGGGCCTTCGGGGGGCAGCGGATAAAGAATGCATTTGTGATTATTGCGGGAAGAAACTAGCGGGGAAGAAGTTTATAACGGCACATATACAGATAGTACATCTTAAAAACACGCACAGACCTTGCTCATATTGCGGTAAATTCCTTGCCTCTGCCCATATGGGTGAACACATTAAGAAACATGAGGTTGAAACTATATTCACTTGTGAACACTGCGGTATAGTTTTAAAAACCAAGCTAGGTTATGTTCAGCACATACGTCTGCATACTGGCGAGAAGCCTTACGCTTGTAAATATTGTGGTGAAACTTTCTCAGCATCTTCAAGAAGATCAGAGCATATACGTAAAGCTCACAAAATGCCTAATACTGTACTGAAATATGCTTGCGAGTACTGCCCGGCGCGCTTCCAACTCCCATACAAACTTAGAAATCATGTGTCCACTGTTCATAATAAGGAGGACAAAGCGGCAGTCCCATTTTCTTGTAAGATTTGCATGGAAAAGTTCAGCAGTTGTAGAGGGCTGACGCACCATAGTAGAAAGCATCAGAAGGAGAGTATGGTGGAGACTTCGCCCCTCCTGCCCAACAGGATCTGCGGAGCCTGCGCCAACACTGTCACCCCAACCATCGCGCTCATTGAATACCTCAGAGACTCTCACAGAAAGTGGACAGAAGCTTCCCACTACCTAGACCAGATAGAGTTTAAAGAAAATGTCCAAACTGCTTACATAGTGGTCGATGATGCTGTCAAAGATATAACTATTTATACAGAGACTGTAAAGAGAGGTCAGCCGGAGGACATTTTGAAGTATTTTAAGAAACGAAAGCAGCAACATAATGCTGTTAAAAGGAGAAATGAATTGGAGAGACGATTGAGGGATTCTGAAATTAATACTGGTCTTAAATGCCCTGAATGTGAAAAGAGCTTTCTTTGCGTATCCAAGTATAACATGCATATGCGTTATTATGATAAACGTGCGTGCGTACATTGCAAAAAACTTATTAAAATCGAAGATTTAAAAAATCATTATAAAGAACATGGTGTAGATACTATGCAATGTGATATCTGCTATGAAACTTTTATGAAACAGGATGCGTTCTTGAAACACAAAGTTACTTATCATAGTAAGGGGCCGAATTTCTGCTATATATGCAAGCTGTCGTATAGAGATCCACACCATTTGGCGTCTCACATGACAAGCAAACATGAACCTAGAATCTGTTTAGCGTGTGATAAGAAATTCTCAAATGTGTACTGTTTTAGAACACACTCGAGAAGATGTAAGAATTCACAAAGAAAAGGCGGCGTATTCATTTGCGATATCTGCGCTAAAGTGTACAGCTCGAAATACGCTCTTAAAGTCCATTTAGAGTATATCCACATGAATAAAGAGCATTCCCACCAATGTGAGCATTGTGGGAAAGTCTTCAACAGCGCGATTCATCTCTTAGAGCATAGCAATAAACATAACAAGGTCCCAGACAGATTCGTTTGTAATATTTGTGGAGTGCCGATGAGCACTCGACGCGGATACCAGAGGCATTATAAGCGTCATCTTAAAAACCCTAACTATGTACCTAGGGGTGTTAAAAACACGGTGAAAACTAAGGAGAAGTATAAATGCGAGTTTTGTGATGAGAAGTTTGTTTTGTTCACTCGTTTGAGAGAGCATGTGATGAACGACCATGCCATGTATACCGAGTCTAGCTGGGACTTGTAA
- Protein Sequence
- MNRQVDVKALVSHIVRGDGLDKCRICMGDTTEGQVYLGDTVMMDGERPVTLAELLEIITGIEVPLEEDLPAGLCTECAQRAMDAASFRTLCRQAASQWDSTLQLLTNCLPIKYKDTTMYIIMKNDEISIANNPKGKPDKYEKISSQKEVQVKDVKHKCQCPDCGKKFAYAQHLYLHLKESMDFKRACYVCAKIMTRDELILHLITAHHLDTYDCKKCPALFKSRKFLIRHTEEAHSPGACTCGDCGRSFKSRPAFNAHLSVHAVKTCPGCDKVFRNQTCYLHHVKKCCDLDISRKTHQTKHKVTIEVKNKKSERRTRVGLRGAADKECICDYCGKKLAGKKFITAHIQIVHLKNTHRPCSYCGKFLASAHMGEHIKKHEVETIFTCEHCGIVLKTKLGYVQHIRLHTGEKPYACKYCGETFSASSRRSEHIRKAHKMPNTVLKYACEYCPARFQLPYKLRNHVSTVHNKEDKAAVPFSCKICMEKFSSCRGLTHHSRKHQKESMVETSPLLPNRICGACANTVTPTIALIEYLRDSHRKWTEASHYLDQIEFKENVQTAYIVVDDAVKDITIYTETVKRGQPEDILKYFKKRKQQHNAVKRRNELERRLRDSEINTGLKCPECEKSFLCVSKYNMHMRYYDKRACVHCKKLIKIEDLKNHYKEHGVDTMQCDICYETFMKQDAFLKHKVTYHSKGPNFCYICKLSYRDPHHLASHMTSKHEPRICLACDKKFSNVYCFRTHSRRCKNSQRKGGVFICDICAKVYSSKYALKVHLEYIHMNKEHSHQCEHCGKVFNSAIHLLEHSNKHNKVPDRFVCNICGVPMSTRRGYQRHYKRHLKNPNYVPRGVKNTVKTKEKYKCEFCDEKFVLFTRLREHVMNDHAMYTESSWDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -