Cstr023130.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:767269-793113[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.085 13.9 0.1 1 23 320 342 320 342 0.98 2 12 0.13 8.3 7.7 0.3 1 23 349 371 349 371 0.96 3 12 0.0022 0.13 13.3 0.5 1 23 375 397 375 397 0.97 4 12 0.00012 0.0074 17.3 2.9 1 23 402 425 402 425 0.98 5 12 0.0082 0.51 11.5 0.1 3 23 432 453 431 453 0.96 6 12 0.00099 0.061 14.4 0.1 1 22 460 481 460 485 0.94 7 12 0.067 4.1 8.6 0.1 3 23 491 512 490 512 0.91 8 12 5.1e-05 0.0031 18.4 0.2 1 23 517 540 517 540 0.98 9 12 0.014 0.85 10.8 0.1 2 23 695 716 694 716 0.97 10 12 5.1e-05 0.0032 18.4 0.7 1 23 722 744 722 744 0.97 11 12 1e-05 0.00063 20.7 1.7 1 23 750 773 750 773 0.98 12 12 1.1e-06 6.7e-05 23.7 0.4 2 23 781 803 780 804 0.95
Sequence Information
- Coding Sequence
- ATGGATGTAACACAAACTGAATCCACCAATGAGGACCCCTTGTTATGGTGCCGCGCCTGCCTTTCGACCGACGGAAGACTGTTTAATATTCATGAATATAAACTTGCTGATGCCTTCGCTCGTATCACAGGGACAACTGTCTCCAAGGATATGCCACAACACCTATGTGGATACTGTGGCATGCTGCTGCGCAAATGTGAATCTTTTAGAGCCATGTGTTTACACACACAACAATATCTATTCACGGAGCTTAAGGACAAGCTGGACCTAGAGGATATTCGCAAAATAAACACCTGTAACCAGTTCCTTAACCTAACTTTAACAGATGTAAAAACCATTGAATGTATTGATATTCACCAAGAAGACATAAAACAGGAACCAATAAGCATTGTAGACATAGACGGCATTATAAAGAAAACTGATACAAGAACAGAATTTGCAAATGAAAAACATGTCCGTAATATACCTGCGAATAAACTTACGTATATTAAAAATAGGGTGAGAAAAATAGAGAATGCTATCAAGAAAAAGAAAGAAATAACAATTGATGATGATAATGATGATATTATTACGGACACTAAAATTAAAATGGAAATTGATGATAGCAATAGTGATGATATCAAAAAAGAGCTCGATATTGATGATGATGAAGACGCCAGTGACGTAAATATTGTTAAGAAACCAATGAAAAGGCAACAAGAAAAAAATAAAAAGACTGTACTTAAGAAGAATAAATTAGAAATGAAAAATATAAAATCTAAAGATACTAAAGTGAGAGAAGTTAAAAAGAAAAAAGTAAAAAGGAAGATGAGGAACCCAGAAAATAATTATATGCCAGAATTTGATTTTGCTAAATTTGAGAGTGCACATGCTGTGAAAATTATTACACTGAGTAAAGAAGAGCAACTGGAAGAGATCGCCGCCCGTAAGAAGTCACAGAACTATTTGGAGTCTCGGTTTCGGTGCGACACCTGCGGGAAAGGGTTTAACGCGGAGCCCGCATTTAACAACCATCTAGCGAGGCACAGTCCGAACGAGGGCGAGTTCGCATGCGAGATCTGCGCAGTACGCTACAAGAAGAAATACAGATGGCAGGTGCACCAGGACGTGCACCGCCTCAAGTTTGTGTGCAACGAATGCAACTACGTGTCTAGAGACAGGGGCCAAGCGAAAAGACATTACGACATGCACGCGGGCAAAACGTACAAGTGCGAGCACTGTGAGAAGAGTTTCAATAAGATGACGTCATATTTGACGCACATACGCGTGGTGCACCCCGCGCAGTGCGCCGCGTGCGACGTGTGCGGCGAAACTTTTGTGGGGGAGAACGGACTGAGGATGCATAAGAACAGAGCGCATGCCGAAAAATCGCAACAATTTAAGTGCACGACGTGCTCAGCAAATTTTGATAGTTTAGAAGCGCTGAACAGACATATGGACACGGCCGGCGAGCACACAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGAGGCGCTACAGGAACATGTCACAGAGACACATCCGAAGGAAACGTATCGGTGTGAGGAGTGCGACATGACATTCCCCGACGCGACGGCCCTCTCGGTCCACACTAAACGCAAGCACCTCAACCAGCGTCCGTCCGCCGCGGCCGACCGCCTGTATAACAGGAAAGTGGCCGCGCGCCGCCGCGCCGCGCTGCGCGGCGCTCCGCCCAGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGTAATGTACTGACTAGTTATACCATGTCGGCTCCGCCCAGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGTAATGTACTGACTAGTTATACCATGTCGGCTCCGCCCAGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGGTAATGTACTGACTAGTTATACCATGTCGGCTCCGCCCAGGGGGCAGGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGAACGCTACCCTGCTGCGGTATCACCAACGTCGACATGATGGCGTGAAACCGTTCGCCTGCAGCCAGTGCCCGAAGACCTTCTACTACAAAACGTCGTTAGATGTACATATACTGACACACACAGGAGAGAGGCCGTTCCAGTGTCCGGAGTGTCCGCTCGCCTTCGTACTGAAGGGGCACCTGAAGCGGCACCATAAGACTGCGCACCAAGGAATCCGCGACAACATCCCGTGCTCCATATGTGGACGAGTGTTCTCGACGAAGTCCGCGCTCACTACGCACGTCAACTCCGTGCACCACGGACAACCATGGCCCAAGAGGGACCGGAGCAAGCGGAAAACTAAAACTAACGCTTAA
- Protein Sequence
- MDVTQTESTNEDPLLWCRACLSTDGRLFNIHEYKLADAFARITGTTVSKDMPQHLCGYCGMLLRKCESFRAMCLHTQQYLFTELKDKLDLEDIRKINTCNQFLNLTLTDVKTIECIDIHQEDIKQEPISIVDIDGIIKKTDTRTEFANEKHVRNIPANKLTYIKNRVRKIENAIKKKKEITIDDDNDDIITDTKIKMEIDDSNSDDIKKELDIDDDEDASDVNIVKKPMKRQQEKNKKTVLKKNKLEMKNIKSKDTKVREVKKKKVKRKMRNPENNYMPEFDFAKFESAHAVKIITLSKEEQLEEIAARKKSQNYLESRFRCDTCGKGFNAEPAFNNHLARHSPNEGEFACEICAVRYKKKYRWQVHQDVHRLKFVCNECNYVSRDRGQAKRHYDMHAGKTYKCEHCEKSFNKMTSYLTHIRVVHPAQCAACDVCGETFVGENGLRMHKNRAHAEKSQQFKCTTCSANFDSLEALNRHMDTAGEHTDLRPCEQCGENCASEEALQEHVTETHPKETYRCEECDMTFPDATALSVHTKRKHLNQRPSAAADRLYNRKVAARRRAALRGAPPRGQVVCEQCGQIMPGAGGVRAVRTDHAGNVLTSYTMSAPPRGQVVCEQCGQIMPGAGGVRAVRTDHAGNVLTSYTMSAPPRGQVVCEQCGQIMPGAGGVRAVRTDHAGNVLTSYTMSAPPRGQVVCEQCGQIMPNATLLRYHQRRHDGVKPFACSQCPKTFYYKTSLDVHILTHTGERPFQCPECPLAFVLKGHLKRHHKTAHQGIRDNIPCSICGRVFSTKSALTTHVNSVHHGQPWPKRDRSKRKTKTNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -