Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387684.1:1328792-1337013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.21 13 7.1 3.3 2 23 189 211 188 211 0.96

2 14 9.9 6.1e+02 1.8 0.7 2 9 217 224 216 236 0.86

3 14 0.00042 0.026 15.5 0.1 1 23 243 265 243 265 0.97

4 14 0.002 0.13 13.4 4.2 1 23 271 294 271 294 0.97

5 14 8.1e-06 0.0005 20.9 4.2 1 23 300 322 300 322 0.98

6 14 0.42 26 6.1 0.2 3 23 331 348 329 348 0.74

7 14 0.099 6.1 8.1 0.8 2 23 358 380 357 380 0.96

8 14 0.5 31 5.9 0.3 1 11 385 395 385 405 0.79

9 14 0.0078 0.48 11.6 2.2 1 23 412 434 412 434 0.96

10 14 0.0003 0.019 16.0 4.3 1 23 440 463 440 463 0.96

11 14 0.0012 0.074 14.1 3.6 1 23 469 491 469 491 0.98

12 14 2.6e-08 1.6e-06 28.8 1.0 1 23 497 519 497 519 0.99

13 14 6.1e-06 0.00038 21.3 0.1 1 23 525 547 525 547 0.98

14 14 0.0061 0.38 11.9 1.1 1 23 553 576 553 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.21	13	7.1	3.3	2	23	189	211	188	211	0.96
2	14	9.9	6.1e+02	1.8	0.7	2	9	217	224	216	236	0.86
3	14	0.00042	0.026	15.5	0.1	1	23	243	265	243	265	0.97
4	14	0.002	0.13	13.4	4.2	1	23	271	294	271	294	0.97
5	14	8.1e-06	0.0005	20.9	4.2	1	23	300	322	300	322	0.98
6	14	0.42	26	6.1	0.2	3	23	331	348	329	348	0.74
7	14	0.099	6.1	8.1	0.8	2	23	358	380	357	380	0.96
8	14	0.5	31	5.9	0.3	1	11	385	395	385	405	0.79
9	14	0.0078	0.48	11.6	2.2	1	23	412	434	412	434	0.96
10	14	0.0003	0.019	16.0	4.3	1	23	440	463	440	463	0.96
11	14	0.0012	0.074	14.1	3.6	1	23	469	491	469	491	0.98
12	14	2.6e-08	1.6e-06	28.8	1.0	1	23	497	519	497	519	0.99
13	14	6.1e-06	0.00038	21.3	0.1	1	23	525	547	525	547	0.98
14	14	0.0061	0.38	11.9	1.1	1	23	553	576	553	576	0.95

Sequence Information

Coding Sequence: ATGAATACTTGTAGGACGTGTCTTAAAACTCCCGCTAACAAGGATATTTCAGGCCTCCAAAAGAGTGTAAAAGATGACAGTATAACGGACATCATGGTATTTTGTTTGGATATAAAGGTTTCAGAAGACTCCAAAATAACTACGAAACTATGCAATAGTTGTTATAGAAAAATCATATCGTTTTACAAATTTAAGGCTCTGTCTTTGAAAAATGATGCATATCTTAAATCGCTGGACCCACTTGAGCCGCCTGCAGACCAAAAACTAACTGTGTACGTGGACGAAAACGGAATTAAACATGAAAATTTCGTGGAATCTGAAGATTTTGGCCCATGTGTAATAGAATATAGCGATAGAGAAATTAAAATAGAAATAGATGTTAAGGAAGACAGACTAGCAGATTCAGAAATATTAGATGATTTTAAGGAAGAAAATACGTTTGAAGATCACATATTTGAATCAGATGAAGAGCCACTGAGTGTGGTACAAAAAATTAAATATGAAAATGTTGAGGATGATACCAAAGAAGAAGTTCCAGAACAAAACTGCGAGCAGCCACTGCTTAAATGTAAAGCATGCCCAAAACAGTTCCACTCCATCGGAGGGCGGAAGAAGCATTACCGGACCAAGCATCTAGGGAAAAAGTCCAAGTGTGACATTTGTGATAAAGAGGTGGTATGCCTGTCAGTGCACAAGCTTAGAGTCCACAACCCGTCAGGCATGCGGTTCACCTGCTCAGTTTGTGACCGCCGCTTTGTATCACAAGCTGTGTTGGACCTCCACATGGTGTCCCACACCAAGGACTACCAGTTCCAGTGTGATGTTTGTCAGAAAAAGTTTAGCTGTAGAGGTTTTCTCTCAAAACATATGCGGCAGGTTCACATAAAGGAAAGGAACCATAAATGTGAACATTGCCCAAAGGCTTTCTTTGGCAAAGATAAACTGCAAGAACATATGAGGACACACACAAATGAGAAAGATCATCAAATTTGCGAGGAATGCGGCAAGTCGGTGGCCAACCTCAAGATGCACGCGCTCCGCCACCAGCCCAAGGACGAGCGGCGCCTGCTGCAGTGCAAGGCGTGCCCCAAGCTGTTCTACTCCATCGGCGGTCGCAGGAAACACTACAGGACCACGCATCTGGGCAAGAAGTACAAGTGTGACATTTGTCATAAAGAGGTGGTGTCCCTGTCAGTGCACAGGCTACGCATGCACGCCCCCGACGACCTCCCGCATGCGTGCGCGCAGTGCGGGCGCCGCTGCGTGTCCCACTCCGTGCTCGAGGCGCACGTGCTCACACACACGAGGGACTATCAGCACGAGTGCGAAACTTGCCTCAAGAAGTTCAGCAGCAAGAATTTCCTTACGAGGCATCAACGGCAGGTGCATGAAAAAGAAAGGAGCCATCAGTGTGAATTTTGTTCTAAGGCTTATTTCAGCAATAATAAACTACAAGAACATTTAAGGTCGCACACAAACGAACGGCCGTTCACCTGCAACGACTGTGGCCTCTCGTTCACAACAAAACAGGCGCTAACTAGACACATGCTCACGCACAGCGACATCAAGAACTACCCCTGCGAGCTGTGCAGCATGAGCTTCAAGGTGCCCGGGAACTTGAAGGCGCACATGATCAGCCACACGAAGGAGAAGCGCTACCCGTGCGCGTTCTGCGGCGTGCGCTTCGGCCGCTCCGACCACCGCAACCGACACGAGTTCACCGCGCACAAGAAACACGGACAAACTGATCCAGATATAAAGCCGGATTGCTGA
Protein Sequence: MNTCRTCLKTPANKDISGLQKSVKDDSITDIMVFCLDIKVSEDSKITTKLCNSCYRKIISFYKFKALSLKNDAYLKSLDPLEPPADQKLTVYVDENGIKHENFVESEDFGPCVIEYSDREIKIEIDVKEDRLADSEILDDFKEENTFEDHIFESDEEPLSVVQKIKYENVEDDTKEEVPEQNCEQPLLKCKACPKQFHSIGGRKKHYRTKHLGKKSKCDICDKEVVCLSVHKLRVHNPSGMRFTCSVCDRRFVSQAVLDLHMVSHTKDYQFQCDVCQKKFSCRGFLSKHMRQVHIKERNHKCEHCPKAFFGKDKLQEHMRTHTNEKDHQICEECGKSVANLKMHALRHQPKDERRLLQCKACPKLFYSIGGRRKHYRTTHLGKKYKCDICHKEVVSLSVHRLRMHAPDDLPHACAQCGRRCVSHSVLEAHVLTHTRDYQHECETCLKKFSSKNFLTRHQRQVHEKERSHQCEFCSKAYFSNNKLQEHLRSHTNERPFTCNDCGLSFTTKQALTRHMLTHSDIKNYPCELCSMSFKVPGNLKAHMISHTKEKRYPCAFCGVRFGRSDHRNRHEFTAHKKHGQTDPDIKPDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409536;
90% Identity: -
80% Identity: -