Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387699.1:7821022-7843769[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.4 87 4.5 0.1 1 23 122 144 122 144 0.92

2 14 0.0013 0.082 14.0 2.6 1 23 277 299 277 299 0.99

3 14 8e-05 0.0049 17.8 0.3 1 23 305 328 305 328 0.96

4 14 0.0016 0.099 13.7 3.7 1 23 333 356 333 356 0.94

5 14 0.0011 0.07 14.2 2.9 2 23 654 675 653 675 0.97

6 14 0.00061 0.038 15.0 3.1 1 23 681 703 681 703 0.99

7 14 0.43 27 6.1 4.5 1 23 760 782 760 782 0.96

8 14 0.0056 0.35 12.0 1.6 1 23 817 839 817 839 0.95

9 14 0.00037 0.023 15.7 1.2 1 23 845 867 845 867 0.96

10 14 0.0012 0.073 14.1 2.9 1 23 876 898 876 898 0.99

11 14 0.00036 0.022 15.8 0.8 2 23 945 966 945 966 0.97

12 14 0.046 2.8 9.2 6.2 1 23 983 1005 983 1005 0.95

13 14 1.8e-06 0.00011 23.0 0.7 1 23 1011 1033 1011 1033 0.98

14 14 8.4e-07 5.2e-05 24.1 3.1 1 23 1039 1062 1039 1062 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.4	87	4.5	0.1	1	23	122	144	122	144	0.92
2	14	0.0013	0.082	14.0	2.6	1	23	277	299	277	299	0.99
3	14	8e-05	0.0049	17.8	0.3	1	23	305	328	305	328	0.96
4	14	0.0016	0.099	13.7	3.7	1	23	333	356	333	356	0.94
5	14	0.0011	0.07	14.2	2.9	2	23	654	675	653	675	0.97
6	14	0.00061	0.038	15.0	3.1	1	23	681	703	681	703	0.99
7	14	0.43	27	6.1	4.5	1	23	760	782	760	782	0.96
8	14	0.0056	0.35	12.0	1.6	1	23	817	839	817	839	0.95
9	14	0.00037	0.023	15.7	1.2	1	23	845	867	845	867	0.96
10	14	0.0012	0.073	14.1	2.9	1	23	876	898	876	898	0.99
11	14	0.00036	0.022	15.8	0.8	2	23	945	966	945	966	0.97
12	14	0.046	2.8	9.2	6.2	1	23	983	1005	983	1005	0.95
13	14	1.8e-06	0.00011	23.0	0.7	1	23	1011	1033	1011	1033	0.98
14	14	8.4e-07	5.2e-05	24.1	3.1	1	23	1039	1062	1039	1062	0.98

Sequence Information

Coding Sequence: ATGGATCAAAACATGACAGAATTGGATCCGCTCAGCACATATGAGTACCCCCCCTATGGTTACCAGCACATGCACTACCCCTACTCTTACGAGATAAAGTTAGAGCAACCGCTAGCACACTATGCTAATCTAGCTGCCTCCATACAGAACCAAACACAGCAAGTCAACGATATACCTCCCGTACCACAAGATACATTAAAAAATACTAATACCAATATTAATACAAGTATTCCTGTACAAGTAGCTACAAGCAGTCAAATTCAAGAAGAGAAACCGTTGTTCGATCTAAATAAAGTTAAAAAAGAAGGCGGTAAAAAAAGCAATTACTGGTCACAAAAAATCACAGATGAAAATTTTCCTTTCTACGCCTGCGCGCTATGCAATGTTAGCTACAAGCTACTAAGAGACCTAGATTCACATCTGGTTGACCATAAGGAAAGACTCACTAGCTACGATTTGCGGATGAAAAATAAACAAAAGAAGAGAAAGTTGAAAAAGGAACAGAAGAAGCTGAAAAAGTTGAAAAAAGAGGTTAAACAAGAGGATATAGAAATTAAACCGGAGGACGGTTATATCGGTAATGAAAAGGCAGCTGATTTTGTTGAGAATTCGAATACGGTAGCTTCAGAGATTACCCAAAATAATGATAATGTTAATGCTAATGTAAATAACGAAAGTGTTAATAAAGTTGATAGTAATGTAAATAACGAAAGTGTTAATAAAGTTGATAATAAAGAAAGTGTTAATACAGTTGATAATAATGTAAATAATGCAAAAACTGGAGAAGCGGATAAGGAAGTGGAGTACAATAAGGATTTGGAGAAGATATACAAATGTTTTGCGTGTAATAAGCAATTCTCGTTAAGTTATTACTTGAAACTACATGTCAGATCTCACACAGACGAAAAACCATACACCTGCGCCGAGTGTGGGCAGTCGTTTATAACGGCGAGCAAACTAGGGCGCCATAACAAGCGGATACACCTTGCCATCAAGTACCAGTGTCGGATATGCTACAAGATATTTACCAGGTTCGAGTATCTGACGCGCCATTTTGACAAAAAACACGCCGAAGACAAGTTGGAAGGGGAGCCTTATGACTACAACGCAATCCTGCCCTACCTCAAAGAACTGGAGGAACAACTCCGAGAGAAGGCAGAGGCGGAAAGCAAGCCCAAAACTGAAGAGCTGTGGAGCGACTGGCCGGAGATGGATCAGGCGCTGATGCAGGACAGGAACGATCTCATGGATGACAAGAAGGACTTCGCTATGAACCATCTCGATATAGTCATGGACGATGTTAAGGTGAGGGGTTGGTTAGTAACTCGAGGCAGGCAATACCTTATCGGGGTAAAAATGAGTGTTTTATCTCAAAACAAGCCTAAATTAGAAGAGCTGTGGAGCGACTGGCCGGAGATGGATCAGGCGCTGATGCAGGACAGGAATGATCTCATGGATGAGAAGAAAGACTTTGCTATGAACCATCTCGATATAGTCATGGACAATGTTAAGGACAGGAACGATCTCATGGATGACAAGAAGGACTTCGCTATGAACCATCTCGATATAGTCATGGACGATGTTAAGCCTAAAACAGAAGAGCTATGGAGCGACTGGCCGCAGATCGATCAAGCGCTGATGCAGGACAGGAATGATCTCATGGATGGGAAGAAGGACTTCGCTATGAACCATCTCGACATAGTCATGGACGACGTTAAAGTGCCAGTAGAAACGATGGAGATAGAGATCAAGTTGGAGAAAGAGCATGACAACGATATCGGTGTTGGCGACGACATGCACGACCATATGGCTGGCAACGACCACGACGATGTTAAAGATGAAAGTTTATCAGATGAGGATTATTTCCCCTCTAACACGTGGGCGGAGCCCCCCAGCATGGAGGCGGGGCCCCCCTCGCCCCCCACCCGCGGCCGCCGCGCCAAGCCCGACGGGCCCCTCACCTGCAAGATATGCGAGAAGAAGATCAGTACGCACTCCTACATGAGGATACACTTGAGGACGCACACAGGGGAGAAACCATACAAGTGCTATATATGCAGCAGGGGGTTCATAACGTCGAGTAAAATGCATAGGCATGTTTTGACACATTCGGAATCGTTTGACAAAGACGGTGTGAAAATTGAAGTGGACGTGAAGCTAGAGGGAGACGAAGCGACGAAAGAGGAAGATGGAGATATGGACACGAAAAAAAAAGCCAAGACGAAAACAAAAAAGAAGAAAGACGAAAAGAAGAAACGCGACTATCAGAAGCGTCCGCACGCGTGCGAGTTCTGCCAAAAACGGTTCCTACACCTCGAAATGCTGCAAGTACATAAGAAGAGCCACGAAGGGGAGTGCGCTACTTTGAAGTGCTATTACTGTCTAGTTGATATAGAGGACGAAAACGTGTTGAAGGAACATGAGGCGACGCATACGGGGCCGAAACCGTTCCTGTGTACGTTGTGCGGAAAGGGGTACAAGCGGAGAGAAACTATGGTATACCACCGCAAAAACCACAAAAGCGAGAAGAAATTCATCTGCGACATCTGTTCGAAGACATTCAACGCGCCGTGCAAACTGCAGCGACACATCGTCAGCCACCGAGCGGACAAATTTGTGCTCCGATACGAGTGTCCAGTCTGTGCGCATATGTTTAACACGAAATATCATGTGCAGATGCATCTGTCAACACATCAGAAAGAGGGGCTGATTTTAGAAGAGAACCGAAACGATATACTGGCTATGGTGCTGCAGAACGCGCGCAAGATACCCAAACAGGGAGACGCCCCAACCAACTTAGCCGACCTGATCCCAGCCGACGAGCGAAGCCGCGTGTGCAACATATGCGGCGAAATGTTTCAACACTTCTACTACCTAGAGGAACATTTGAAAAGTCACGGATCCCGAATAGCCATAGAAGACGAAAATAAACAGGAGGAAAGAAAACACATATGCCAAGTATGCAATAAAAGCTTTAAATTGCACTATTATTTAAAACTACACAGTTTCACACACACTAAGGAGAAACCTTACATATGTCAGCAATGCGGGAAAGGTTTTATAACCAAAGGGAAATTAAAAAGGCACTTAGAAACGCATTCTGGTCTTAAAAAATACCAATGTCATATCTGTTATAAGTTCTTTACGCGACCTAGTTATCTTAGGATACATGTGAGGACTATACATGGGAATCAAGATTATAATTTTAGAGTAGGATTTAGGGAGGGAAAGGAGTTCGGTATAGCTGCGCCGTTGCTGCCGGTTATGACGCAATATAACGATTAG
Protein Sequence: MDQNMTELDPLSTYEYPPYGYQHMHYPYSYEIKLEQPLAHYANLAASIQNQTQQVNDIPPVPQDTLKNTNTNINTSIPVQVATSSQIQEEKPLFDLNKVKKEGGKKSNYWSQKITDENFPFYACALCNVSYKLLRDLDSHLVDHKERLTSYDLRMKNKQKKRKLKKEQKKLKKLKKEVKQEDIEIKPEDGYIGNEKAADFVENSNTVASEITQNNDNVNANVNNESVNKVDSNVNNESVNKVDNKESVNTVDNNVNNAKTGEADKEVEYNKDLEKIYKCFACNKQFSLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLEGEPYDYNAILPYLKELEEQLREKAEAESKPKTEELWSDWPEMDQALMQDRNDLMDDKKDFAMNHLDIVMDDVKVRGWLVTRGRQYLIGVKMSVLSQNKPKLEELWSDWPEMDQALMQDRNDLMDEKKDFAMNHLDIVMDNVKDRNDLMDDKKDFAMNHLDIVMDDVKPKTEELWSDWPQIDQALMQDRNDLMDGKKDFAMNHLDIVMDDVKVPVETMEIEIKLEKEHDNDIGVGDDMHDHMAGNDHDDVKDESLSDEDYFPSNTWAEPPSMEAGPPSPPTRGRRAKPDGPLTCKICEKKISTHSYMRIHLRTHTGEKPYKCYICSRGFITSSKMHRHVLTHSESFDKDGVKIEVDVKLEGDEATKEEDGDMDTKKKAKTKTKKKKDEKKKRDYQKRPHACEFCQKRFLHLEMLQVHKKSHEGECATLKCYYCLVDIEDENVLKEHEATHTGPKPFLCTLCGKGYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLSTHQKEGLILEENRNDILAMVLQNARKIPKQGDAPTNLADLIPADERSRVCNICGEMFQHFYYLEEHLKSHGSRIAIEDENKQEERKHICQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGFREGKEFGIAAPLLPVMTQYND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410580;
90% Identity: -
80% Identity: -