Cstr023119.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387701.1:616616-637683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00062 0.038 15.0 0.5 1 23 377 399 377 399 0.95 2 12 0.02 1.2 10.3 0.9 1 23 406 428 406 428 0.97 3 12 0.09 5.5 8.2 0.6 1 23 432 454 432 454 0.96 4 12 0.00027 0.017 16.2 2.5 1 23 459 482 459 482 0.97 5 12 0.00088 0.054 14.6 0.4 3 23 489 510 488 510 0.97 6 12 0.019 1.2 10.4 0.1 1 20 517 536 517 538 0.95 7 12 0.014 0.85 10.8 0.0 2 21 548 567 547 570 0.88 8 12 0.035 2.2 9.5 0.5 3 23 577 598 576 598 0.96 9 12 0.011 0.71 11.0 0.3 2 23 630 651 629 651 0.97 10 12 3e-07 1.8e-05 25.5 1.1 1 23 657 679 657 679 0.98 11 12 3.6e-05 0.0022 18.9 0.3 1 23 685 708 685 708 0.95 12 12 0.00029 0.018 16.1 0.0 1 23 715 738 715 738 0.96
Sequence Information
- Coding Sequence
- ATGAATAGAAGTCAAAGAAACTCGCTACTGCAACACGAGGTGTTGTGCTGCCGTGTATGTTTAATGACGGAGTGTAGACTGTACCATATTCATGAATATAAACTCGCCGATGCCTTTACTCGCATCTCTGGGGCTCCTGTTGCCAGAGACAGTCTGCCGCAGTATCTGTGCGCGCACTGCTACGTGCTGCTCCTCAAATGCTCGTCCTTCAGAGACATGTGTCTCCGCACGCAGAAGCGACTCACACCTGCGCTGCTCAAGGGGGCGCTGGATACAGATTACATTCGCAAATACCAACTCCCTCACCGGTCGCTCAAATTAACTCAAACTGAAGTCGAAATAGTAGAATTACTCCCACCGGAAGATCTAAACAGTGAACACACTGTGTCGATGGATGACATCAATGAAGCTGATCTTGAAATAAAATCGGAAATTGGAGAAGATTTAATTGAAATCAGTGATGATGATTTTGAGGATGAAATCGTTTTAAATGATGGTATAATCACCAAAAGAAAAATTAAGAAAAAAAAGACTAAAGAAAATGTCTTGAAACCTGAAAGAAACACCAAAAGCCCCAAAAGGCAGACTGAAACACCAGTGAATAATAATATGTTCCCAAAAATTGAACGTATCTACAGTCAAAGCATGACTATTGATAGAAGTCTAATAAAATTAGAAAAAGAAGTACCAAAAACAAGTCAAACTCCAGTAAAGAATGTAGTCTTAAAAATCGGACGTGTCTATAATGAAAGTATGAATATTGATCAAAATCTAATGAAAATCGAAAAACAAAATACAGAAACAATGAAAATGATGACGATTGAAGTGAAGAATGATATAATTGAATTCAAAGTTGGTGAAAAAACGGATGTTAATGATGATCTTATTCATAAAGAAGTCGGTCACGAAAATATAAACGTAAACATTAATAGAAAAATGGTCCAAAACGTAAAACGTAGCGAACATCCGAAGAAATTTATAAAAAATAAAGATACGCAACAGCTAACTAAATTGAATTTTGCCGCAATTGAGAGTACATATGAACTTAAAATTGTCACTTTGAGTAAGGAAGAGCAACTGGAAGAGATCGCAACACGCAAGAAGTCCCCGAACTATTTGGAGTCGCCGTTTAGGTGCGAGCATTGTGGGAAAGGGTTTGGCGTGGAGTCCGCCTACAACAACCACCGAGTCTGGCACAGCCCGAACCAAGGTGCGCACTCATGTGACATCTGCGCTATGAGATTTAGGGCGCCCAACAAGCTCAGTCAGCACCAGGCCCGGCACCGACTGAAGTTCATTTGCAACGTGTGCGACTTCGTCTCCAGAACCAGGCCACAAGCGGCTAAACATCACGGCACGCACACGGGCACGACCTACGAGTGCCCGCACTGCGGGAAGAACTTCATAAAGGTCACGACGTACTTTTCCCACTTGCGTCTGAGGCACCCCGAGCTGAACGTGGACTGCTTTGACTGCGGGGAGACCTTCGTCAGCGACTACGGGCTCATGCAGCACAAGAGGAAGTCACATGACTTGATATTAAAACAGTTTACATGCGCTATCTGCTTAGTCAAATTCACCAGTGAAGAGGCGCTGAACAAACATACAGAGCTGGCCGGCGAGCATCGAGAGAAACTGTTGCCCTGCGAGCAGTGCGGCGAGAACTATGCCACTGAAGACGCGCTAAAGGAACATGTGGGGGAGATGCATCCCACCGAGGCAAATCACTGTGAATTGTGCGACCTGGCGTTCGCGAACGAGGCGGCGCTGGACACGCACAACCGCCGCAAGCATCTCGGCCAGCGGTACGCGCAGCCGCCCGGACACTACCGGAACAAGCACAACAAACATTATAATAACAGAAGGAAGCAACAGGTCAAGCCGACCATGTGCGAACAGTGCGGGGTTACTGTTCGGTATCCGTCGATGATGGTGTACCACAAGCGGACGCACCTCGCCGTGAAGCCGTTCCCGTGTCCGCATTGCCCGAAGACATTCGTCATGCCATTTTTGCTTAAAAGCCACATGCGAACGCACACGGGGGAGAAGCCGCACCAGTGCCCCGAGTGTCCGCTCGCCTTCGCCATGAAAGGAAACTTGAAACGCCATTTTGACACTGCACATCGTGGTATACGCGGTTTCTTCCCTTGTCCGGTGTGCGGGCGCATCTCCACCACCAAGGGCTCGATGCAGGTGCACGTGCGCGCCGTGCACGGCGGCGGCGGCTGGCCCAAGCGGAACCGCGCCAAACGGAGAACCAACATATTAGTAGATAAAGAATGA
- Protein Sequence
- MNRSQRNSLLQHEVLCCRVCLMTECRLYHIHEYKLADAFTRISGAPVARDSLPQYLCAHCYVLLLKCSSFRDMCLRTQKRLTPALLKGALDTDYIRKYQLPHRSLKLTQTEVEIVELLPPEDLNSEHTVSMDDINEADLEIKSEIGEDLIEISDDDFEDEIVLNDGIITKRKIKKKKTKENVLKPERNTKSPKRQTETPVNNNMFPKIERIYSQSMTIDRSLIKLEKEVPKTSQTPVKNVVLKIGRVYNESMNIDQNLMKIEKQNTETMKMMTIEVKNDIIEFKVGEKTDVNDDLIHKEVGHENINVNINRKMVQNVKRSEHPKKFIKNKDTQQLTKLNFAAIESTYELKIVTLSKEEQLEEIATRKKSPNYLESPFRCEHCGKGFGVESAYNNHRVWHSPNQGAHSCDICAMRFRAPNKLSQHQARHRLKFICNVCDFVSRTRPQAAKHHGTHTGTTYECPHCGKNFIKVTTYFSHLRLRHPELNVDCFDCGETFVSDYGLMQHKRKSHDLILKQFTCAICLVKFTSEEALNKHTELAGEHREKLLPCEQCGENYATEDALKEHVGEMHPTEANHCELCDLAFANEAALDTHNRRKHLGQRYAQPPGHYRNKHNKHYNNRRKQQVKPTMCEQCGVTVRYPSMMVYHKRTHLAVKPFPCPHCPKTFVMPFLLKSHMRTHTGEKPHQCPECPLAFAMKGNLKRHFDTAHRGIRGFFPCPVCGRISTTKGSMQVHVRAVHGGGGWPKRNRAKRRTNILVDKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -