Cstr019119.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
Sall1
Assembly
GCA_947568885.1
Location
OX387690.1:16430578-16431981[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 4.9e-05 0.003 18.5 0.1 2 23 143 164 142 164 0.97
2 11 0.21 13 7.1 1.1 6 23 177 195 170 195 0.86
3 11 6.2e-05 0.0038 18.2 1.7 1 23 202 224 202 224 0.99
4 11 2.5e-05 0.0016 19.4 0.7 1 23 230 252 230 252 0.98
5 11 0.00069 0.042 14.9 0.3 1 23 258 280 258 280 0.96
6 11 9.4e-05 0.0058 17.6 4.4 1 23 286 308 286 308 0.98
7 11 6.8e-07 4.2e-05 24.3 1.2 2 23 315 337 315 337 0.97
8 11 0.00049 0.03 15.3 0.7 2 23 343 361 342 361 0.93
9 11 0.00089 0.055 14.5 4.5 1 23 367 390 367 390 0.91
10 11 0.038 2.4 9.4 0.2 1 23 396 421 396 421 0.94
11 11 4e-05 0.0025 18.8 2.5 1 23 427 450 427 450 0.98

Sequence Information

Coding Sequence
ATGGATTCGAAAATTTGTCGAGTTTGTCTCAGCAGACCGGGCGATACATCGCTGTTCGAAAAACACGATGGTTTACCGTACAGCGACAAAATAATGCGGTTCGTAAAGATTACTATCAGGGAAAACGACGGATTGCCAAGCTCGATTTGCCTCAGCTGCATTGCCGAGCTCTCTGTGTCATACGAATTCGTGCAAAAGTGTGAAGCTTCAGACCTGGCTTTAAAAACCTTAAAACTGGACAGTCAAAGAGAATCAGCGTTAAACATAAAGAACGAAGACATAAAAGACGATCCAGATGAACCTTACCTTAACTTTAGCTTCCTAGATGATGACTACGATGTTAACTGGGAGGAGCCAGTCAAGAAAATAAAAGATAAGAAAGGTAAATATGTTAAGAAAAGGAAGAAAGGAAAAATGGAGCCTATACAGTGTGTCACCTGCGGGCAGATGACCACCAGCCCCTCAGCCATGGAGATCCACATGAGAACACATACTGGTGATAAACCATATTCCTGCATTACTTCCTCGTGTGATGCCAAATTTGCTACTAAAGGAGCTTTGAAACGACATTGCGAGACTTTTCACAGTGAACGAGAGAGAAAATACACTTGCGAGCATTGCGGCAGCAGCTTTTTTAGAAAAAACGAGATCATAACGCACATAAGAGTCCACACAGATGAACGTCCATATGCCTGCCCATTTTGCTCCAGAAAGTTCCGGCAAATAGCTTCACTCATCCGTCATAAGAGAATTCACACTGGAGAGAAACCGTTTGCTTGTTCCATATGTAATAAGAAGTTTGCCGATAGAACTGTGGCCCGGAAGCACCTGCTAGTTCACAGCGATGAGAAACACTACACCTGCCATCTCTGTCACAAGTCCATGAAAAGCAACAGTGCTCTAAAAGTGCACATGAACCTTCATGTGAATAAGAAGCAAAATGTTTGCAACTACTGCGGTATGACATTCTCAATGAAAGGAAACCTCAAAACCCACATAAGACGCAAGCATTCAGAAAAGTCTGGACAGTGTAATATTTGCTCAAAGACATTTTCAGACTTAGAAGTCCACATGCGCAAGCATACTGGTGAAAAGCCGTTCATATGTCATGTATGTCAGCAAAAGTTTGCGACAAAGCGTAGTCTGACACATCACCTAGCGTTTAGACATGAGAATGCGGCAAAATTCAAGTGTTCCATTGGGGAGTGTACAAGAACTTTCCCTACTGCGCCAATGTTAGAGTTCCATTTGCTAAAGCAGCATACAAACCACACTCCGTATGTGTGCCAGCATTGTTCCCGAGGGTTCTTCCGGATGAGTGACCTGTCCCGCCACCTTCGGGTCAGTCACATGGAACTGCAGCTCAAAGAAGACAAAACCATACTCACCCTTAATGGTCCTTAG
Protein Sequence
MDSKICRVCLSRPGDTSLFEKHDGLPYSDKIMRFVKITIRENDGLPSSICLSCIAELSVSYEFVQKCEASDLALKTLKLDSQRESALNIKNEDIKDDPDEPYLNFSFLDDDYDVNWEEPVKKIKDKKGKYVKKRKKGKMEPIQCVTCGQMTTSPSAMEIHMRTHTGDKPYSCITSSCDAKFATKGALKRHCETFHSERERKYTCEHCGSSFFRKNEIITHIRVHTDERPYACPFCSRKFRQIASLIRHKRIHTGEKPFACSICNKKFADRTVARKHLLVHSDEKHYTCHLCHKSMKSNSALKVHMNLHVNKKQNVCNYCGMTFSMKGNLKTHIRRKHSEKSGQCNICSKTFSDLEVHMRKHTGEKPFICHVCQQKFATKRSLTHHLAFRHENAAKFKCSIGECTRTFPTAPMLEFHLLKQHTNHTPYVCQHCSRGFFRMSDLSRHLRVSHMELQLKEDKTILTLNGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00658693;
90% Identity
iTF_01134056;
80% Identity
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