Cstr020909.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:1226866-1229640[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00018 0.011 16.7 0.6 1 22 72 93 72 93 0.97 2 17 1.2 76 4.7 0.2 2 23 121 142 121 142 0.94 3 17 0.0066 0.41 11.8 0.4 2 23 165 186 164 186 0.96 4 17 0.002 0.12 13.5 0.1 1 23 190 212 190 212 0.96 5 17 0.14 8.7 7.6 0.4 1 15 217 231 217 240 0.78 6 17 0.013 0.82 10.8 1.2 1 23 246 269 246 269 0.94 7 17 0.00036 0.022 15.8 1.2 1 23 276 299 276 299 0.97 8 17 6.3e-05 0.0039 18.2 1.7 1 23 306 328 306 328 0.96 9 17 1.7e-06 0.00011 23.1 3.0 1 23 334 356 334 356 0.98 10 17 0.00015 0.0093 17.0 0.7 3 23 361 382 361 382 0.97 11 17 0.0051 0.32 12.1 0.2 1 23 465 488 465 488 0.95 12 17 0.31 19 6.5 0.4 2 23 515 537 514 537 0.92 13 17 0.05 3.1 9.0 4.8 1 23 559 581 559 581 0.97 14 17 0.00055 0.034 15.2 2.1 1 23 585 607 585 607 0.96 15 17 0.05 3.1 9.0 0.2 1 21 641 661 641 664 0.90 16 17 0.015 0.92 10.7 2.6 1 23 671 694 671 694 0.96 17 17 0.00011 0.0068 17.4 3.5 1 23 701 723 701 723 0.98
Sequence Information
- Coding Sequence
- ATGTTGAAACAAAACGTAAAAGGACGCAGCCAAACCGAACACGAAACTGTGATAAAGGTAGAGCCTAGCGTCATACCAATAGAAAATTGGCTCGCAGATAAACCGAGATATCAGCGCAGCGCTCGGGCAGAGGCTAGATATGCCACGAAGAAAAATGCCACCGCAATACTTGAGTGCTGGTCCGTGAGCCCCTTCCGATGGAAGCGCAATCAGTTCAAATGCGCCTACTGCGAAGCCAGCTTCACAGATTGTGCCCTCCTAAGACTTCACATACGCACTTGTTCACCCCAACACAGTGTCAAAGACATCTACAGCAAGTTCAAAGAGATGTCCCTGATCAATGTCGACGTAACTCAAGCCACGTGCCGTCTCTGCTCACTCCCGTACAGTGACGTCAAACAAATGCGAGAGCACGTCATCGAACACGGCTACGATTACGAAATCAACCAGCCCGAAGGCGTTCTCCCTTTCTTCCTCAACAAAGAATCATGGAGCTGCGTCATTTGCCAGCAAACTTTCAACAACTTCTTAAAACTATACGAGCACATGAACATACATTACCAACATTACATTTGTCCAACTTGCGGAAAGGGATATATGACTGCGCCAAGGTTAAGGAAGCATTCAGAGGTTCACATTTCTGGAACGTTTCCTTGCAACGAGTGCCCTAAGATATTTAGAATGCGCGCTGCTAGAGATTATCATAAAGCGCACGCTCACGCCAAAGCGCCTAGATACGAATGCCCTCATTGCAACATGCGGTTTGACGGTTACTACGACAGGATGAATCATCTCAACGCCACTCATAGTGAGAAAAAAGTCTCATATCGTTGTCCACACTGCGAGCTAACCTTTAAGACATCAGGCAAGCGAGCTATTCACGTTCGATCAGTTCACTTCCCGCCGCAGCGCGATTTTAGATGTTCAAGTTGCGAATGGAGCTTCAAAACTGCCTACGAACTGAGAAGACACAAAGTAAAACATTCAGGAGAAAGAAATTTTCACTGCAACGTCTGTGATAAATCATTTCCTAGGAACAGGGCGTTAAGGACGCATTTGAAAACTCATGATGATTTGGGCTGCAAGTGGTGTGGAGCCATGTTTAAGCAGCGGATGCAATTGCTGACTCACATGAGGGAAATGCATTCGGATATGTGCGAACTTGTTAACTTAGGTTCCGCTAATGCGGACGCGGAGGCAAAAGTAGGAGTTAGACGTGTTAGGAAATTAAAGGAGACCGTAAGCGCGCGTCAGATGCGCCGGCGTCGCCGCGCCAACAACGAGTTGCCAGAGGAATCTGAGAAACGCATCTCCAAAACTATGATGCGCAGGAACGCTATCACGCTCCTAGAATGCTCCACCGCTTGGGCTTTCCGCTGGTTCCACAGCGCCTTTTACTGCTCCTACTGTGATGCTAAATTCGTAGACACCGCTCCATTGCGTGAACACGTCCAAAACAACCACTTAATAGATCCACCCACTAATAAAATCTTCGCCAAACTAACCGAAAATAATATGGTCAAAGTAGATATAGGCAATCTCAGTTGTAGACTATGCAACCATCCCTTAACGGACATAGACGACCTGAAAGATCATCTTGTCTCTCAACACCAGATAACTATTAACTCCGATTATAGCGACGGAATATTACCGTTTAAGCTTGACCAAAACGGATTCTTTTGTCAAAAATGTTTCTCTCATTTCGTTAGCTTTTCTAAATTAAATGAACACATCAATACACATTATAAAAATCATATTTGCGATTCGTGTGGCAAAGGGTTTGTATCAAAATCTCGGTTTCGTACTCACGTTCAGTCGCATGAAACGGGAAGCTACCCTTGCGGGGATTGTACTGAAGTGCTAGAAACTAGAGCCGCTAGAATGTGCCACAGGCTGCGTGTGCATAAGAAAGGTGTAAGATACACGTGTCCTCGTTGCCCAGAACTGTTCACGACATATTACGCGAGAGCAAAGCACTTGGTCGACGACCATGCTCAACAACAACGGGACTACGACTGCACAGCTTGTGGCAAATCATTCGAAACCAGCTGCAAGAGAGCAGCTCACTTCCGGACCACGCATAAACCTGCCGAGAAGCGATACGAATGCCCCCAGTGCCACTCTACTTTCTACACCAATACAAAGTTAAGACGCCACGTGCTGACTCACGCAATGGATTACAATCAAACCCAATACACTAAATGA
- Protein Sequence
- MLKQNVKGRSQTEHETVIKVEPSVIPIENWLADKPRYQRSARAEARYATKKNATAILECWSVSPFRWKRNQFKCAYCEASFTDCALLRLHIRTCSPQHSVKDIYSKFKEMSLINVDVTQATCRLCSLPYSDVKQMREHVIEHGYDYEINQPEGVLPFFLNKESWSCVICQQTFNNFLKLYEHMNIHYQHYICPTCGKGYMTAPRLRKHSEVHISGTFPCNECPKIFRMRAARDYHKAHAHAKAPRYECPHCNMRFDGYYDRMNHLNATHSEKKVSYRCPHCELTFKTSGKRAIHVRSVHFPPQRDFRCSSCEWSFKTAYELRRHKVKHSGERNFHCNVCDKSFPRNRALRTHLKTHDDLGCKWCGAMFKQRMQLLTHMREMHSDMCELVNLGSANADAEAKVGVRRVRKLKETVSARQMRRRRRANNELPEESEKRISKTMMRRNAITLLECSTAWAFRWFHSAFYCSYCDAKFVDTAPLREHVQNNHLIDPPTNKIFAKLTENNMVKVDIGNLSCRLCNHPLTDIDDLKDHLVSQHQITINSDYSDGILPFKLDQNGFFCQKCFSHFVSFSKLNEHINTHYKNHICDSCGKGFVSKSRFRTHVQSHETGSYPCGDCTEVLETRAARMCHRLRVHKKGVRYTCPRCPELFTTYYARAKHLVDDHAQQQRDYDCTACGKSFETSCKRAAHFRTTHKPAEKRYECPQCHSTFYTNTKLRRHVLTHAMDYNQTQYTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410572; iTF_00871574;
- 90% Identity
- iTF_00410572; iTF_00871574;
- 80% Identity
- -