Cstr020738.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
-
Assembly
GCA_947568885.1
Location
OX387696.1:11123392-11137433[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00071 0.044 14.8 1.3 1 21 179 199 179 200 0.92
2 20 9.8 6.1e+02 1.8 0.7 14 22 206 214 204 214 0.88
3 20 0.57 35 5.7 8.5 1 23 222 244 222 244 0.98
4 20 9.1e-06 0.00056 20.8 1.9 1 23 250 272 250 272 0.99
5 20 0.16 10 7.4 3.8 1 23 278 300 278 300 0.98
6 20 3.3e-05 0.0021 19.0 5.7 1 23 306 328 306 328 0.98
7 20 0.00046 0.028 15.4 5.4 1 23 334 356 334 356 0.99
8 20 0.041 2.5 9.3 2.4 1 23 362 384 362 384 0.97
9 20 1.8e-05 0.0011 19.9 3.3 1 23 390 412 390 412 0.99
10 20 9.1e-06 0.00056 20.8 2.6 1 23 418 440 418 440 0.98
11 20 7.8e-06 0.00049 21.0 6.4 1 23 447 469 447 469 0.99
12 20 0.00021 0.013 16.5 2.5 1 23 530 553 530 553 0.97
13 20 9.8 6.1e+02 1.8 0.7 14 22 557 565 555 565 0.88
14 20 0.015 0.96 10.6 5.8 1 23 573 595 573 595 0.98
15 20 0.0095 0.59 11.3 0.7 1 23 601 623 601 623 0.99
16 20 0.12 7.3 7.9 2.9 1 23 629 652 629 652 0.96
17 20 3.3e-05 0.0021 19.0 5.7 1 23 658 680 658 680 0.98
18 20 0.00013 0.0079 17.2 5.5 1 23 686 708 686 708 0.99
19 20 0.036 2.3 9.5 3.4 1 23 714 736 714 736 0.96
20 20 1e-05 0.00064 20.6 2.2 1 23 742 764 742 764 0.98

Sequence Information

Coding Sequence
ATGGACTTAATGCAAGCGTGTCGCTGCTGCTTGCGGTGTCCTCCGGACAAGGACCTGACGACGCCGTACACACATCTCGACAAAACGGAGATATATGCCGACATGATCAACCAGTGCTTCAATATACATCTGGTAGTGGTTGGCTCGGGCTCGTGCGGCATCTGCTCGGCGTGTGTGGGCCGCCTGCGAGACGCGAGCGACTTCAAGCTGCAAGTGCAAAGCATCCAGGCGGAGCTACAGGCACTGCTGCAGGGAGCGAGTGTCAAAGAAGAACCTGCAGTTAAGCTGGAAATGCAGGACGAAGATGGGGCAAGTGAGGACCCTTTATTGAATGAAGAGCCCCCGGTTAAGCCAGAGACGCTGGATGAAGATGAGATACCTAGGGAGATGTTACatgaagtCCTAATAAAGACAGAAATGGAGGATAAAGAGGAGACACGAGATGAGATGTTGGTTTGTTTGGAGGGGTCGGCTCGTTCCGTGGTGCTCGAACGCCTCCGCGGCGACGCGACTGTTATTAATGAAGACAAGCCATATAGCTGCGATCACTGTGGCAAACGTTTCAAAACCAAGGTTATTGTAAGGAAACACATTCAACGCATTAACTTATCGACATCAAACCTGCGACATCACCAGAGGACACGCACTGTTGAGAAACCTTTTCATCGATGTGATTATTGTGAATACAAGACCCGTAAAAAAGCCCACTTAATATGTCACATCAGAAAACACACTGGAGAAAAGCCGTACAAGTGCAGCAACTGCGACTACAGGAGCAGTCGGAAAGGAGACTTACGAACACACCAAAGGATTCACACCGCAGACAAACCATACACGTGTAATCAATGCGACTTCAAGTGCTGGTTGAAATCTGACTTACAAAAACATGAGATGAAACATGGAGAGAAGCCCTTGCATCGATGTACTTACTGTGATTACAAAGCCCGTAGAAAAGATCACTTACAACGTCACATTAGAATACACACCGGAGAAAAGCCGTACAAATGTAGTCATTGTGACTACAAGAGCACGCAGCAAAGTTGCTTAATGATACACCAAATGATTCACACCAGGGAGAAAACATTTCAATGTAGTCGTTGCTACTTCAAGAGTGGGCAAAGATCTGATTTACAGAAACACAAATTGATACATGCTAACGAGAAGCGTTTTCAATGCAGCTACTGTGATTACAAATGCAAGTATAACGCAAACTTACAAATTCACCTCAGAATACACACAGGCGAGAAGCCTTATACGTGTAGCTATTGCGATTACAAATTCAGGCGAAAAGAGACTTTTCTCGCTCACCAACAAATACACACTGGTGAGAAACCTTATTATACATGCAGCGACTGCGATTACAAATGCCGTGATAAATCAAATCTACGTCGTCACCGGAAGAAGCATGGGACGAAGCCTCAAAATGTAGCCATTGCTACTACAAGTGACGAGCCCCCGGTCAAGTTAGAGACGCTGGATGTAGATGAGATGCCTGATGACATGTTGTTTTGTTCGGAGGGGTCGGCTCGTTCCGTGGTGCTCGAACGCCTCCGCGGCGACGGGACTGTCAACAGCGAAGACAAGCCATATAGCTGCGATCACTGTGGCAAACGTTTCAAAACCAAGGTTATTGTAAGGAAACACATTCAACGCATTCACTTATCGACATCAAACCTGCGACATCACCAGAGGACACGCACTGTTGAGAAACCTTTTCATCAATGTACCTATTGTGAATACAAGAACCGTAAAAAAAGTCACTTAATAAGTCACATCAGAATACACACTGGAGAAAAGCCGTACAAGTGCAGCAACTGCGACTACAGGAGCGGTTGGAAAGGAGACTTACGAACACACCAACGAATTCACACCGCAGACAAACCATACACGTGTAATCAATGCGACTTCAAGTGCTGGTTGAAATCTGACTTACAAAGACATGAGATGATGACACATGGAGAGAAGCCATTGCATCGATGTACTTACTGTGATTACAAAGCCCGTAGAAAAGATCACTTACAACGTCACATTAGAATACACACTGGAGAAAAGCCGTACAAATGTAGTCATTGTGACTACAAGTGCACGCAGCGAGGTTCCTTAGTAAAACACCAAATGATTCACACCATAGAGATGACGTTTCACTGTAGTCGTTGCGACTTTAAGAGTGGGCGGAAATCTGATTTACAGAAACACAGTTTGATACACACTGACGAGAAGCGTTTTCAATGCAGCTACTGTGATTACAAATTCATGTATAAATCACAGTTACAAATTCACGTCAGACTACACACAGACGGTCTTCGGCAATTTGGTACTCCAGAGTACGCTCTCCAGACTGCACGATCTTCACCGATCCGGACTACGTGCCCGAGCCATCGGAGTCTGGCTGGTTTAGAGGCGGATTATTAA
Protein Sequence
MDLMQACRCCLRCPPDKDLTTPYTHLDKTEIYADMINQCFNIHLVVVGSGSCGICSACVGRLRDASDFKLQVQSIQAELQALLQGASVKEEPAVKLEMQDEDGASEDPLLNEEPPVKPETLDEDEIPREMLHEVLIKTEMEDKEETRDEMLVCLEGSARSVVLERLRGDATVINEDKPYSCDHCGKRFKTKVIVRKHIQRINLSTSNLRHHQRTRTVEKPFHRCDYCEYKTRKKAHLICHIRKHTGEKPYKCSNCDYRSSRKGDLRTHQRIHTADKPYTCNQCDFKCWLKSDLQKHEMKHGEKPLHRCTYCDYKARRKDHLQRHIRIHTGEKPYKCSHCDYKSTQQSCLMIHQMIHTREKTFQCSRCYFKSGQRSDLQKHKLIHANEKRFQCSYCDYKCKYNANLQIHLRIHTGEKPYTCSYCDYKFRRKETFLAHQQIHTGEKPYYTCSDCDYKCRDKSNLRRHRKKHGTKPQNVAIATTSDEPPVKLETLDVDEMPDDMLFCSEGSARSVVLERLRGDGTVNSEDKPYSCDHCGKRFKTKVIVRKHIQRIHLSTSNLRHHQRTRTVEKPFHQCTYCEYKNRKKSHLISHIRIHTGEKPYKCSNCDYRSGWKGDLRTHQRIHTADKPYTCNQCDFKCWLKSDLQRHEMMTHGEKPLHRCTYCDYKARRKDHLQRHIRIHTGEKPYKCSHCDYKCTQRGSLVKHQMIHTIEMTFHCSRCDFKSGRKSDLQKHSLIHTDEKRFQCSYCDYKFMYKSQLQIHVRLHTDGLRQFGTPEYALQTARSSPIRTTCPSHRSLAGLEADY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-