Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387691.1:16277941-16286014[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.4 25 6.2 0.5 1 23 174 196 174 196 0.95

2 20 0.89 55 5.1 1.1 1 23 240 262 240 262 0.93

3 20 3 1.9e+02 3.4 0.3 3 23 302 323 300 323 0.92

4 20 3.5e-07 2.2e-05 25.2 0.1 2 23 348 369 347 369 0.96

5 20 0.0026 0.16 13.1 0.1 2 23 377 399 376 399 0.95

6 20 0.049 3 9.0 0.0 1 23 405 427 405 427 0.88

7 20 0.024 1.5 10.1 0.4 1 23 433 457 433 457 0.93

8 20 0.001 0.065 14.3 7.0 5 23 466 484 465 484 0.97

9 20 0.24 15 6.9 2.8 1 23 622 644 622 644 0.95

10 20 0.00021 0.013 16.5 1.3 2 23 651 673 650 673 0.92

11 20 2.9e-06 0.00018 22.4 5.4 1 23 679 701 679 701 0.96

12 20 6.2e-06 0.00039 21.3 3.3 1 23 707 729 707 729 0.98

13 20 0.0018 0.11 13.6 0.5 1 23 735 757 735 757 0.98

14 20 1.8e-05 0.0011 19.9 0.8 1 23 763 785 763 785 0.94

15 20 0.0036 0.22 12.6 4.5 1 23 791 814 791 814 0.95

16 20 5.1 3.1e+02 2.7 0.1 5 23 875 893 872 893 0.74

17 20 0.0003 0.019 16.0 5.1 1 23 899 921 899 921 0.98

18 20 0.0044 0.27 12.4 0.0 1 23 927 949 927 949 0.98

19 20 0.00022 0.013 16.5 1.3 1 23 954 976 954 976 0.95

20 20 0.00091 0.056 14.5 2.1 6 23 986 1003 984 1003 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.4	25	6.2	0.5	1	23	174	196	174	196	0.95
2	20	0.89	55	5.1	1.1	1	23	240	262	240	262	0.93
3	20	3	1.9e+02	3.4	0.3	3	23	302	323	300	323	0.92
4	20	3.5e-07	2.2e-05	25.2	0.1	2	23	348	369	347	369	0.96
5	20	0.0026	0.16	13.1	0.1	2	23	377	399	376	399	0.95
6	20	0.049	3	9.0	0.0	1	23	405	427	405	427	0.88
7	20	0.024	1.5	10.1	0.4	1	23	433	457	433	457	0.93
8	20	0.001	0.065	14.3	7.0	5	23	466	484	465	484	0.97
9	20	0.24	15	6.9	2.8	1	23	622	644	622	644	0.95
10	20	0.00021	0.013	16.5	1.3	2	23	651	673	650	673	0.92
11	20	2.9e-06	0.00018	22.4	5.4	1	23	679	701	679	701	0.96
12	20	6.2e-06	0.00039	21.3	3.3	1	23	707	729	707	729	0.98
13	20	0.0018	0.11	13.6	0.5	1	23	735	757	735	757	0.98
14	20	1.8e-05	0.0011	19.9	0.8	1	23	763	785	763	785	0.94
15	20	0.0036	0.22	12.6	4.5	1	23	791	814	791	814	0.95
16	20	5.1	3.1e+02	2.7	0.1	5	23	875	893	872	893	0.74
17	20	0.0003	0.019	16.0	5.1	1	23	899	921	899	921	0.98
18	20	0.0044	0.27	12.4	0.0	1	23	927	949	927	949	0.98
19	20	0.00022	0.013	16.5	1.3	1	23	954	976	954	976	0.95
20	20	0.00091	0.056	14.5	2.1	6	23	986	1003	984	1003	0.97

Sequence Information

Coding Sequence: ATGAGTAACGGGGCTGAACAGATATTTCTACCTGATTCCGCGAACAACCTGCCTCACAGAGTCGAAATGATGAGGTCGATGAGACCCGGTAATGGAGCGCCGACTATCAATCTTGAGAATGTGTCAGACTTCACAAAGGTGTGTCGTGTGTGTGCAACTGTCACAGAGCTTGTGGTTCCCATCTATGGTGAAGAGGGCCAGCGCATGAACCTTGCTGATAAAATAAAGAGACATCTGCCTATCAAGGTAACGGAGAATGATATGCTGCCCCTGGTGGTATGCTTTCAATGCACCAGCACCCTCCTGGCGACGCACGAGCTGGTGGCGTGCAGCCTGCAGGCCGACGCGGCGCTGCGCACTGCACGCTCTCGGCGCGAGCGGCGTCCGGAGCAGGCGCTGGACACAGAGGGCATCGTCGAAGACCGGCCAGACAAGGACGTAACATTTAACGCGGTAGTTAAGAACGTGCTCGTCAACTATTTCCACACCCTCAACATGAACGAAGGTGATGAATGCCAGTTCGCCTGCCAGAAATGCTCATGGAGAGGAAATTCCACAGAACTACTTATAAACCATTTACACGCGCACCAAGTTAAGCCCGATACTGTTGACAGCTTCATACGACAATATATAACTTTTGAGGAACCGCTAGAGTCAGATGATGATACAACAGAAGCGCCAATAATCAAATTTAAGCCTCCAAAGCCCGTAGCTGCTCACTGCTGTCCGTTCTGCGACAGTATATTCTCATCAACAGCGCGTTTAGGTCTTCATATCGCCGAGCATGTAGAAATCAGCGAAGATAGCGCTGTGGAGTGCTGCGGAGCGCTTTACAGCGAACGTTCTATATTCATCCAACATGCCCTTGACAAGCATGAACGTGCTCCGCCTCCTGGCATAATATGCTGCGCTTGTGGCCAAAAAGCCGACTCTCTCGTTACTCTAACAGAACATATCAAAAACACCCACGCCGATGATGCTATCACTCGAAAAAGAACAGACCGCAATCCTAAAAGCAAAGACCAGAAATACATCCCAACTCCATGCCCCGATTGTGGCAAGACGTTCTCTAATAAATACAACATGGCTGTACATTTGCGAGCGCATAAAGAAAAATCGGAAAAAATCCAATGCGAGTTGTGCAGTAAACGGTATGGTAGTCAGAGCGCCTTGGTCAGTCATGTGAAGCTAGCTCATAGTGGGTTACTCCGCTTCGCTTGTGACATTTGTGGTGAACGGTTCCCTAATCGCACCGTCCGTGCCGTCCACCTCGCCTTACATACAGGGGAAAGACCGCACGTCTGTACACTCGAGGGCTGCTCAAGTGCATTTAGGAGTCGCGACTCGTTGTTAAAACATTTGGATGCGCACAGAAATGTGCGGACATATGCGTGTCATTGTGGGAAGGATTTCAAGAGGAGGTGGCATTTAAAAAGACATCTGAAAACACATCAAGAGAGCGGTCCATTAAAGAAGAGGGAAGAGCCGGATCCAATTACTGACGCAACATCTTGGGCGGGAATTACTGAAGACGGTCACGATCCAGGGGTCAATGGCGAGGCTGATGGTGATGACCGAACCTCGAGTGACGAAGACGATCGCCCGCTCGCCACCCTAACTTCCGAGAAAGCTGACGCCTATACACACTTCTACAACGCCCTGCTAAACTTTAGAAACCATTTTCTAAACGAACACGACGCCCGCTACCCAGAATTTACAGAGTCGAGCGAAAGCGAAGCGGAGGCAAACGGATCAGACGATTACGACGACTTGTCCAAGAACAATATGCGACGGGATCGCATGGATGAAGCTACGAGACTCGAATTAGCGAGCGCGCAGACCCGCATAGACGGCAAGACTTACTACGCGTGTCGCATATGCGGGAAACATCTCAGCTCCCCACACACTTATGTGTTTCATACGCGCATACACACAGGCGAGCGCCCGTGCGTGTGCCATATATGCGGGAAGCAGTTCCGAGCGCCGAACGGCTTGCAGAGACATCTCGCGGAAACCCACGAGCGGCGTCGCCGGCACGCGTGTCGACACTGCGATCGGACGTTTGCCAACTCGCAGAACCTAAAGCAGCATATGAGGACGCACACGGGGGAAAGGCCGTACTCGTGCTCGCTTTGCGGGAAGCGTTTTCGTCAATCGGGATCCCTGCACGCGCACAAGAAAACTCACATTGCGCTGTTGCCGTTCCGCTGCGCGCACTGTCCGGCCGCGTTTCGACTGCGCGCGGGGCTGGTTCGACACAGGCTGCGGCACTCCGGGGAGCGCCCACATAATTGTGAAATCTGCGGTCGGTCTTTTAGAACGCGAGCGGATTTATCGGCGCATCGCACGGCGCACTCGCCGGCGCGCGCACACGCGTGCGGTGTGTGTCACGCCGCCTTCCGCTCGCGTCGCGCGCTGCGCCACCACACGAGGCGCCTGCACCCGCCACCACCGCCACCACCGCCACCACCACCACCACCACCACCACCGCCGCCGCAGATACAGGACGATATGGCGAATCGATCTTACTTCGTCCTGGCGCCATTAGACGCGCCGCAAAAAGTCGAAAACGATCAAACAGAAAACTCGGCGGTCACTGCGCGGCGGCGGCAGCACTGCGCCGTCTGCGGGCTCGGCGTCGCCGTCGGCAACCTCGCCAGGCACGTCCGCACCGCGCACGCACGGACACGCCCTCACACATGTCGACGGTGCCCGGCCACCTTCTCCAGAAGAGACCATCTCAAAGACCACGAGCGCACGCATGGGAGTACCCGCGAATATGTCTGCGACACTTGCGGGGCCGCCTCGCGCTCGGCGGCGGCCCTGCGCATGCACAAACAGAGCCACAGACGTCGCCTACACGCCTGTTTGCATTGCGACGCGCGATTCCGTCGCAAAGCGGAACTTACCGCGCATGTGTCGGTGCATACTGGAGAGCGAGCGCATGTGTGTCGGTGCGGCAAGACCTTCCGACTGCGCGCGCAGCTGACGCGCCACGAGCGCACGCACCGGGACCCGCCGCGGTGA
Protein Sequence: MSNGAEQIFLPDSANNLPHRVEMMRSMRPGNGAPTINLENVSDFTKVCRVCATVTELVVPIYGEEGQRMNLADKIKRHLPIKVTENDMLPLVVCFQCTSTLLATHELVACSLQADAALRTARSRRERRPEQALDTEGIVEDRPDKDVTFNAVVKNVLVNYFHTLNMNEGDECQFACQKCSWRGNSTELLINHLHAHQVKPDTVDSFIRQYITFEEPLESDDDTTEAPIIKFKPPKPVAAHCCPFCDSIFSSTARLGLHIAEHVEISEDSAVECCGALYSERSIFIQHALDKHERAPPPGIICCACGQKADSLVTLTEHIKNTHADDAITRKRTDRNPKSKDQKYIPTPCPDCGKTFSNKYNMAVHLRAHKEKSEKIQCELCSKRYGSQSALVSHVKLAHSGLLRFACDICGERFPNRTVRAVHLALHTGERPHVCTLEGCSSAFRSRDSLLKHLDAHRNVRTYACHCGKDFKRRWHLKRHLKTHQESGPLKKREEPDPITDATSWAGITEDGHDPGVNGEADGDDRTSSDEDDRPLATLTSEKADAYTHFYNALLNFRNHFLNEHDARYPEFTESSESEAEANGSDDYDDLSKNNMRRDRMDEATRLELASAQTRIDGKTYYACRICGKHLSSPHTYVFHTRIHTGERPCVCHICGKQFRAPNGLQRHLAETHERRRRHACRHCDRTFANSQNLKQHMRTHTGERPYSCSLCGKRFRQSGSLHAHKKTHIALLPFRCAHCPAAFRLRAGLVRHRLRHSGERPHNCEICGRSFRTRADLSAHRTAHSPARAHACGVCHAAFRSRRALRHHTRRLHPPPPPPPPPPPPPPPPPPQIQDDMANRSYFVLAPLDAPQKVENDQTENSAVTARRRQHCAVCGLGVAVGNLARHVRTAHARTRPHTCRRCPATFSRRDHLKDHERTHGSTREYVCDTCGAASRSAAALRMHKQSHRRRLHACLHCDARFRRKAELTAHVSVHTGERAHVCRCGKTFRLRAQLTRHERTHRDPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -