Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387701.1:297103-304409[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7e-06 0.00043 21.2 0.3 1 23 130 152 130 152 0.98

2 14 0.0013 0.081 14.0 1.0 1 23 157 179 157 179 0.99

3 14 5.7e-06 0.00035 21.4 1.7 1 23 185 207 185 207 0.96

4 14 0.00041 0.026 15.6 4.1 1 23 213 235 213 235 0.97

5 14 4.3e-05 0.0026 18.7 0.5 1 23 240 262 240 262 0.97

6 14 7.1e-08 4.4e-06 27.4 0.5 1 23 268 290 268 290 0.98

7 14 7.2e-05 0.0045 18.0 0.5 1 23 296 318 296 318 0.99

8 14 9.7e-07 6e-05 23.9 2.0 1 23 324 346 324 346 0.98

9 14 1e-06 6.4e-05 23.8 1.4 1 23 352 374 352 374 0.98

10 14 0.00054 0.033 15.2 2.6 1 23 380 402 380 402 0.96

11 14 2.4e-05 0.0015 19.5 0.9 1 23 408 430 408 430 0.98

12 14 0.0012 0.074 14.1 0.3 1 23 435 457 435 457 0.98

13 14 1.2e-08 7.3e-07 29.9 0.3 1 23 463 485 463 485 0.98

14 14 0.00022 0.013 16.5 0.3 1 23 491 513 491 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7e-06	0.00043	21.2	0.3	1	23	130	152	130	152	0.98
2	14	0.0013	0.081	14.0	1.0	1	23	157	179	157	179	0.99
3	14	5.7e-06	0.00035	21.4	1.7	1	23	185	207	185	207	0.96
4	14	0.00041	0.026	15.6	4.1	1	23	213	235	213	235	0.97
5	14	4.3e-05	0.0026	18.7	0.5	1	23	240	262	240	262	0.97
6	14	7.1e-08	4.4e-06	27.4	0.5	1	23	268	290	268	290	0.98
7	14	7.2e-05	0.0045	18.0	0.5	1	23	296	318	296	318	0.99
8	14	9.7e-07	6e-05	23.9	2.0	1	23	324	346	324	346	0.98
9	14	1e-06	6.4e-05	23.8	1.4	1	23	352	374	352	374	0.98
10	14	0.00054	0.033	15.2	2.6	1	23	380	402	380	402	0.96
11	14	2.4e-05	0.0015	19.5	0.9	1	23	408	430	408	430	0.98
12	14	0.0012	0.074	14.1	0.3	1	23	435	457	435	457	0.98
13	14	1.2e-08	7.3e-07	29.9	0.3	1	23	463	485	463	485	0.98
14	14	0.00022	0.013	16.5	0.3	1	23	491	513	491	513	0.98

Sequence Information

Coding Sequence: ATGGAGGAAGTGCGCGTGAAGAAGGAGTCCCTGGACATGGAGGCTGTGGGCCTAAAACAGGAGCCTCTGAACAATGAGGCTGTGGGTCTTAAACTGGAGTCCCAGGGCAATGAGGCTTTGGACTTAAAACAGGAACCCCTGGAGGAAGCAGAGGCAGTGAATGGAGTGCTACCAAGTGATCTGGTGTTTACAGAATATGTGTGCATCAAGGTCGAGGCGGAGTTTGTTGGGGGTGAGCAGGAGGGAGAGGGAACGAGCCAGAGCGAGACGACACCAGCTTGCGGGAGCGAGACAGAACCAAAGGAACAACACCAAGATGAAGGACTAGCGACGGCACGCGAGACAGTAGCCCCGGCCAGTGCAGAGACACAAAAAATAGAAAACACATACTCGTGCGATGTCTGTAAAAAGGAATTTCCACAATTAGGCGCCTTAACTAAGCATAAACGAATTCACGCAGAAAAAACTTACCAGTGCAAAACGTGTGATATGCGGTTCAGACTGCTAAGTATATTACAAGCACATGAACGCCGTCACAGAGGCGAGAAGCCTTACGACTGTAAAATATGCCAAAAGCGCTTCTCGACAACGTACGATTTGAAGAAACACGAGCTTATCCATTCTGGCGAAAAACCTTACTCCTGTGACGTATGTAAAAAGCAATTTAGACAACTTCATTCATTGAATTTACACAAACAAAACCACGCAAGCAAACCGTATTTCTGCGAAGTATGTTATAAGAACTTTACAAATTTAGATGCCTTGAAGGAGCATGAACGAATACACACAAAAGAAAAGAGATTTTCTTGCGATGTATGTGGAAAAGCTTTCAGGAATTCATCTGCATTAAATGATCACAAAAGAACACACACCGGTGAGAAACCTTATCAATGTGGCACGTGCGAAAAAGAATTTGCGAAATTGCAGGATTTAAAAACACATGAGCGTATCCACACCGGGGAAAGGCCTTACTCCTGCGAAACGTGTGAAAAGAGCTTTAAACAGTGGAATCAATTAAAAGTACACAAACGATCACACACAGGCGAGAGGCCTTATCCTTGTGGTACATGTGATAAGCGATTTGCGCAATTGAGCCATTTGAAGGCTCACGAACGGCGTCACAGGGGTGAAAAACCTCACTCCTGCAAAACGTGTGAAAAGCGCTTTTCGGAAATGTACGACTTGCAGAAACACGAGCTAATTCATACTGGCGAGAAACCTTTTTCATGTGACGTATGTGAAAAGCGATTTAGACAAACGAGTGCGTTGAATTTACATAAACAAATTCACACTAGAGAAGCGTATCGCTGCGACAAGTGCATTAGGGTGTTCACAGAATTGGATGATTTAAAGAATCATGAACAAGTACATTCGAAAGACAGAAGATTTCCTTGCGATGTATGTGGAAAGGAGTTCAAGCAACCGTCTCTATTAAACAAGCACCTAAGAACACACACCGGTGAGAAGCCTTATCCCTGTGGCACGTGTGAAAAAAAATATGCGAAATTGGCGAGTTTAAAGAGACATGAGCTTACCCACACCGATTAG
Protein Sequence: MEEVRVKKESLDMEAVGLKQEPLNNEAVGLKLESQGNEALDLKQEPLEEAEAVNGVLPSDLVFTEYVCIKVEAEFVGGEQEGEGTSQSETTPACGSETEPKEQHQDEGLATARETVAPASAETQKIENTYSCDVCKKEFPQLGALTKHKRIHAEKTYQCKTCDMRFRLLSILQAHERRHRGEKPYDCKICQKRFSTTYDLKKHELIHSGEKPYSCDVCKKQFRQLHSLNLHKQNHASKPYFCEVCYKNFTNLDALKEHERIHTKEKRFSCDVCGKAFRNSSALNDHKRTHTGEKPYQCGTCEKEFAKLQDLKTHERIHTGERPYSCETCEKSFKQWNQLKVHKRSHTGERPYPCGTCDKRFAQLSHLKAHERRHRGEKPHSCKTCEKRFSEMYDLQKHELIHTGEKPFSCDVCEKRFRQTSALNLHKQIHTREAYRCDKCIRVFTELDDLKNHEQVHSKDRRFPCDVCGKEFKQPSLLNKHLRTHTGEKPYPCGTCEKKYAKLASLKRHELTHTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -