Cstr021014.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:3006759-3021943[+]
Transcription Factor Domain
- TF Family
- SAND
- Domain
- SAND domain
- PFAM
- PF01342
- TF Group
- Other Alpha-Helix Group
- Description
- The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.033 4.5e+02 1.2 0.0 11 32 261 282 260 286 0.90 2 8 0.031 4.3e+02 1.3 0.0 11 32 294 315 293 320 0.90 3 8 0.031 4.3e+02 1.3 0.0 11 32 372 393 371 398 0.90 4 8 0.033 4.5e+02 1.2 0.0 11 32 450 471 449 475 0.90 5 8 0.033 4.5e+02 1.2 0.0 11 32 483 504 482 508 0.90 6 8 0.033 4.5e+02 1.2 0.0 11 32 516 537 515 541 0.90 7 8 0.0039 53 4.2 0.0 11 35 549 573 547 577 0.90 8 8 0.0039 53 4.2 0.0 11 35 582 606 580 610 0.90
Sequence Information
- Coding Sequence
- ATGAGTGAAACGGTGTTCGAGCGGAGAGCCCCGTCCGGAGACAGCATGAGAGTACACGATTATTTGTACGACTCGGCCTTCATCGTGTCGGGCGCCCGTGACTACGCGCGGGCCGCCTTCAAAGCCGCCATGGCGTCTGCACAAGTTAATATACAGCCGCTGTACAGGACCATGTTTTCAGAGCTGAAAACAGCGCCCAGTGCACAAGTCGTATACCATCCGAACTGCCGCCTGCCCAGCCACCTGGATCGTTCGTACGCCGCCTACGTGGCCAGAGTGGAGATCGACCGCAGCGCCCCCACTCCGGAGCTGACCGGCAAGGACCGGTACCGGTTTGCTGCCAAGCCGAAGAAGCTTCTGGACATGGCCAGCGTGACGCCGCAGTTCCAGCCTCCCACGCCAGTGGTCCCTGGTGATGGCCGACCTAAGAATAAAGGCACCCAGAGCAAATACAGCCTACTGGATTTTGGTTCCGTCTGCGGCGTGCGACGCGTAGGTATCAATCCGAGGTCGTGCGGAGAGTTCCATAGGCTGAAGAAGAAGGGTCTAGACATGGCCGACGTGACGCAGTGGTTCCTGGTGACGGAGCTAGTGGAGTCGTGTAGTTTTCGATCTCGCCAATTATGTTTGGCACCGCAACCAGCTCCTCTAGTTCCCTATTCTTCCTACGCCTCCATCTTCGTGGCAGTCACACATACAAATTACCCCATCATTGTTTGTACCAGGGAGTCATCAGCGCAGACAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGTGAGTTAGCTGTGTATAACTTATTGTTTGCACCAGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGTGAGTTAGCTGTGTATAACTTATTGTTTGCACCAGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCCGTGGCAGCCGGACGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCAGTGGCAGACGGATGGCAAGCAGGCGGAGGATTGCGAGAACACACCTGAAGTCCTTTATCTGGACAAGCTGGAGTGGGGGAGTCATCAGCAGTCAGTCCAGTGGCAGACGGATGGCAAGCAGGCGGAGGATTGCGAGAACACACCTAAAGTGCTTTCAATCCAGGCAAAGATCTATTTATTTATTTAA
- Protein Sequence
- MSETVFERRAPSGDSMRVHDYLYDSAFIVSGARDYARAAFKAAMASAQVNIQPLYRTMFSELKTAPSAQVVYHPNCRLPSHLDRSYAAYVARVEIDRSAPTPELTGKDRYRFAAKPKKLLDMASVTPQFQPPTPVVPGDGRPKNKGTQSKYSLLDFGSVCGVRRVGINPRSCGEFHRLKKKGLDMADVTQWFLVTELVESCSFRSRQLCLAPQPAPLVPYSSYASIFVAVTHTNYPIIVCTRESSAQTVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGELAVYNLLFAPGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGELAVYNLLFAPGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVPWQPDGKQAEDCENTPEVLYLDKLEWGSHQQSVQWQTDGKQAEDCENTPEVLYLDKLEWGSHQQSVQWQTDGKQAEDCENTPKVLSIQAKIYLFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -