Cpom032407.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
nfxl1
Assembly
GCA_033807575.1
Location
CM066365.1:10540633-10543104[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 4.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 21 0.065 1.4e+03 0.7 0.4 4 10 169 175 168 175 0.96
3 21 3.1e-07 0.0068 17.7 15.9 3 19 186 202 185 202 0.95
4 21 1.8e-06 0.04 15.2 12.1 3 19 239 255 237 255 0.91
5 21 1.5 3.4e+04 -3.7 1.0 5 10 279 284 279 284 0.86
6 21 8.4e-10 1.8e-05 25.9 12.2 1 19 290 308 290 308 0.99
7 21 8.3e-08 0.0018 19.5 17.1 3 19 345 361 337 361 0.86
8 21 1.9 4.2e+04 -4.0 0.7 1 4 370 373 370 373 0.94
9 21 2 4.4e+04 -5.3 2.2 5 10 384 389 384 389 0.88
10 21 5.9e-06 0.13 13.6 18.3 1 18 395 412 395 413 0.97
11 21 1.4e-08 0.00032 21.9 17.3 1 19 422 440 422 440 0.99
12 21 7.7e-05 1.7 10.0 5.1 9 19 488 498 486 498 0.89
13 21 0.024 5.3e+02 2.0 1.0 6 12 497 503 497 504 0.92
14 21 0.015 3.3e+02 2.7 5.5 3 11 509 517 508 518 0.88
15 21 0.37 8.2e+03 -1.8 3.3 14 18 547 551 547 552 0.85
16 21 0.21 4.7e+03 -1.0 0.4 8 12 568 572 567 579 0.79
17 21 0.0028 61 5.0 6.4 1 11 588 598 582 599 0.91
18 21 2 4.4e+04 -6.4 3.6 5 10 615 620 613 620 0.66
19 21 7.6e-05 1.7 10.0 15.1 1 18 628 645 628 646 0.91
20 21 5e-05 1.1 10.6 12.2 1 16 687 701 687 706 0.87
21 21 1.9 4.2e+04 -4.0 0.6 6 10 736 740 735 741 0.78

Sequence Information

Coding Sequence
ATGGCCCGGCGATACCACGACGCAGCTGCAAAATTGCAGCAAAATGTACAGAAACATTTGAAGGGAATGAAAGAGCTTTCTTCGTCGGAAGATGAGGAACCATACGAATCGAGCGTCCTCGAGGGCGTGCTGCAGAGCTATAGGAATGGCGGTGGCGATGCGCACATGCTCAACCGCACGAAAAACATGTTGGAGGAGGCTATAAGCGGCCGCCCAGTTACGTGTCTCATTTGCATAGGTTCCATCAAACGCGCCCATCCCATCTGGACTTGCGACCACTGCCACTCGTACTTCCATCTCTCCTGCATCCAGAAGTGGTCCAATGACAGCATTAGCCTACGTAGCGAGGAAAACCACGGCCCGATCGCCGTATTTGTGCCCAAGAAAATTGAATGGTGCTGTCCCAAGTGTCGCCAGTCGTATAGCAAAGAGGAAATTCCTCGCAAGTATCGCTGCTTCTGTAGCAAAACTGACGATCCTCCATTTCATCCATGGTTGATTCCACATTCGTGTGGAGAGGTGTGTGAAAAAAGGTTGTCAACAGGGGATAATTGCAAGCATAAATGTCTATTGTTATGCCATCCTGGTCCCTGTCCACCGTGCCCACAAACTGTCAATGGAGTATGTTTCTGTGAGAAGGAACGTAAGAGAGTACGCTGCAGCGCTGCAAAATGGTCTTGTGGccaacaatgtacaaaattaCTGTTGTGCGAATCTCATAAATGTGAGAATGTTTGCCACGAAGATGCCTGCCCTCCTTGTACGTACACAAGTGTCCAGACCTGTTTATGTGGAGCTGAGAAGGTCAAAAGACCATGCAATGATCCTGTATGGCGCTGCCAGAAGCATTGTAACAAACCATTCTCATGTGGTTACCATAAATGTGAAGAAATATGTCATTCAGGTGATTGTGGCGATTGTCCCAACTCTGGGATGCGGTCCTGTCCTTGTGGAGCTAATCAGAGATTTGTTCAGTGCCCTGATGTCATGGAGACCTGTATGGGGACCTGTGGGAAGACTAAGGATTATTGTGAACACACTTGCCCAGAGAAATGCCACAAAGGCCCCTGTCCTCCATGCCAAGTGTTGATTGAAAAAAAGTGTCAATGCGGCACACATGTGAGATCATTACCTTGTAGTAAGGAGTATAAATGTGAAACAAAGTGCCGAGGCATAAGACCTTGTGGAAAACATGGTTGTGCACGTAAATGTTGCAATGGAAACTGTCCGCCGTGTGAGAAAATCTGTGACAAGCCCCTGCAGTGTGGCCGTCATAAGTGCACAACAGTATGCCATCACGGTCCATGCTATCCTTGTCCCAGGGAATCCAAAGTAACTTGCCGTTGTAAAGAAACCTATGTAACAGTTCCCTGTGGTAGAGAGAAACACACTAAAGCTCCTAAATGTAGTCTCCTTTGCAAGCTTAAATATAAATGTGGACATGTAGAAGAAAACAAACATTCCTGCCATTTTGGTGATTGTCCTCCTTGTAAGGCAATATGTCATAAACAGTATGAGAATTGTGAGCATGACTGTAAAGCGGTTTGCCATGCCTTTGTTACAGTAGTGTTTAAGCAAGTAGAGAAGCCCGCTACACCATGGGAAGTGCAGCCACCAAAGACTAAAATAATGACTCTTGAATGTCCACCGTGTGAGATTCCAGTTCCTATTGTTTGTTTTGGGGAGCATGAAACAGCAGATCAACCATGCCACTCTGCTTCGCGACGCCCCTGTGGTCGCGAATGTGGCCGAGAACTTCCTTGCACTAAACACAAGTGCAAACTGCTGTGCCACTTGCACACAGCGAATCCTAACTATCCTAACGTTCCTTCTTCCTGCGAAACATGCAATAGAGAATGTCTAGCCCGAAGACCAGACAGGTGCAGCCATAAATGTGCTAGAGGTGTTTGCCATCCAGGACCCTGTCCTACCTGTGAAGTCATAGAAAAAATTCCATGTCACTGCAAAGTTACCGAATTATATTTACGATGCCGTGAATTGAGTTCGGCTACAGAAGAAATGCTGTCATGTAAGCAGCAGTGCCCTAAGAATCTGGAATGTGGGCACAGGTGCAGGAACCAGTGCCATCCAGGCAGCTGTGCGAGCCAAGTCTGCACTAAGAAAACAAAGGTTTACTGCCCATGCGGGAACTTGAAGAGAGATGCTCCTTGTAATCTTGTAAGGAGTGGTGAAGGGAAACCTTCTTGTGACtccacttgtgaagaaaaacgCATTGCAGCTCAGTTAGAAAgagaaaaagaagaaaagagACGTAAAGAGATTGAGGAGGCGAAAAATCGCAAGGAGTTAGCGGAATATGAATGGAAATTGagtggaaagaagaagaaatataaAGAGAAGAAGGTTGTGGCCAATAGGGATGATCGGAATCGGTTGCAAAAGTATTGGATTCCAATGTTTTCGGTTTTGGTTGTTGTAATCGctgcaatttattttataatttatgtttga
Protein Sequence
MARRYHDAAAKLQQNVQKHLKGMKELSSSEDEEPYESSVLEGVLQSYRNGGGDAHMLNRTKNMLEEAISGRPVTCLICIGSIKRAHPIWTCDHCHSYFHLSCIQKWSNDSISLRSEENHGPIAVFVPKKIEWCCPKCRQSYSKEEIPRKYRCFCSKTDDPPFHPWLIPHSCGEVCEKRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAKWSCGQQCTKLLLCESHKCENVCHEDACPPCTYTSVQTCLCGAEKVKRPCNDPVWRCQKHCNKPFSCGYHKCEEICHSGDCGDCPNSGMRSCPCGANQRFVQCPDVMETCMGTCGKTKDYCEHTCPEKCHKGPCPPCQVLIEKKCQCGTHVRSLPCSKEYKCETKCRGIRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTTVCHHGPCYPCPRESKVTCRCKETYVTVPCGREKHTKAPKCSLLCKLKYKCGHVEENKHSCHFGDCPPCKAICHKQYENCEHDCKAVCHAFVTVVFKQVEKPATPWEVQPPKTKIMTLECPPCEIPVPIVCFGEHETADQPCHSASRRPCGRECGRELPCTKHKCKLLCHLHTANPNYPNVPSSCETCNRECLARRPDRCSHKCARGVCHPGPCPTCEVIEKIPCHCKVTELYLRCRELSSATEEMLSCKQQCPKNLECGHRCRNQCHPGSCASQVCTKKTKVYCPCGNLKRDAPCNLVRSGEGKPSCDSTCEEKRIAAQLEREKEEKRRKEIEEAKNRKELAEYEWKLSGKKKKYKEKKVVANRDDRNRLQKYWIPMFSVLVVVIAAIYFIIYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00023391;
90% Identity
iTF_00411076;
80% Identity
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